RNA id: TCONS_00055118


Basic Information

Item Value
RNA id TCONS_00055118
length 538
lncRNA type retained_intron
GC content 0.46
exon number 2
gene id XLOC_028378
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 764100 ~ 779796 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGAGCAGTTGTGTCGACTGTACCCACGGATAAAGGTTCTGGCCTTTGGTGCAAAACCTGAATCAACACTGCACACATATTTCCCATCATTCCTGTCACGAGCCACACCCAACTGTCCTGGTGCCATGAAGAAAGAGCTGCTGAGGAGTCTGACGGAGTGTCTGAGCGTGGACAGTCAGAGTCTGAGTGTTTGGAGGCAGCTGTACACCAAACACCTGCCGCAGTCCAGGTGAGCAGAGTCTCTGAGCGTGTTTGCATGtgcaccaatactccgattttaatacgaTCAAGAcagtactctgattaagagtcttccAGTAAACAGAGGTTTTAGATGACATCAATCCAACTAAAGTATTAAACACAAGTCGAATGAAGACACGTGGAGTTTTCCTATTTCAGTGGCTTTATTGAAGTGCAGGACAGACATGGAAACACtgaaatcaaactattactgtcgtgtaggactttttgacacattttgcaacaggatagtccacacacacggctgtttgggCTCACAGACATGCACATCTt

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110307-2 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMEM214 (transmembrane protein 214).

Ensembl:

ensembl_id ENSDART00000150852

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055116 lncRNA downstream 1532 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 1721 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055114 lncRNA downstream 18279 751290 ~ 753073 (-) True XLOC_028377
TCONS_00055112 lncRNA downstream 37005 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA downstream 38868 723830 ~ 732484 (-) True XLOC_028376
TCONS_00057976 lncRNA upstream 127570 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 127570 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 147360 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 238568 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 249924 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055113 mRNA downstream 10792 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055109 mRNA downstream 85940 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055107 mRNA downstream 380910 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA downstream 380921 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055105 mRNA downstream 440604 325028 ~ 330748 (-) False XLOC_028371
TCONS_00055119 mRNA upstream 11252 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055120 mRNA upstream 12910 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055121 mRNA upstream 14674 787066 ~ 797831 (-) True XLOC_028379
TCONS_00055122 mRNA upstream 26304 798696 ~ 815871 (-) False XLOC_028380
TCONS_00055124 mRNA upstream 46536 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055111 other downstream 85933 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 31755 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 164837 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1288132 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1902714 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3720174 4492566 ~ 4496791 (-) True XLOC_028449

Expression Profile

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