RNA id: TCONS_00055119


Basic Information

Item Value
RNA id TCONS_00055119
length 2619
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_028379
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 783644 ~ 797858 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTACGAGAGAGACTGCGCACTGATCCACACCGCAGAGACACGGGACAGATTTACCACAACCGACACTGATCTGGAGTAGATACCCAGAGGAGAGCAAGAGCACTACAGACACGTCCACCTACTgacgTTGTGGGATGGCGGTAAACGTTTACTCCACATCGATGACCATCGAGAACCTGAGCAGACATGATATGCTGGCCTGGGTGAACGACTCTCTGCAGCTCACCTACACCAAGATCGAGCAGCTGTGCTCAGGTGTGGCCTACTGTCAGTTCATGGACATGCTGTTTCCCGGCTGTATTCTGCTCAAGAAGGTGAAGTTTCAGGCCAAGCTGGAGCACGAGTACATCCACAACTTCAAAGTGCTGCAGGCGGCCTTCAAGAGGATGAACGTGGACAAGATCATTCCAGTGGAGAAGCTGGTCAAAGGGAAGTTTCAGGACAACTTTGAGTTCGTTCAGTGGTTTAAGAAGTTTTTTGACGCCAATTACGACGGGAAGGAGTACGACCCTCAGTTAGCGCGGCAGGGTCAGGACGTCACACCTCCACCAAACCCAGGACCCCAGCGGACGTCACCGACAGCACCAAAAACAATGCCCACCCCCCAGCGTGCCATAAGCTCCACCCCCTCAACTGGAATACGACGAAACACACCAATATCACGAAATGGAGGCGACGCCGAGATCATGGAGCTCAACCAACAGCTGATGGATCTGAAATTGACGGTGGACGGTTTGGAGAAAGAGCGAGACTTTTACTTCAGCAAACTCAGAGACATTGAGCTGATCTGCCAAGAGCACGAGAGCGACAGTAACCCCGTCCTGGGAAAAATCATCGACATCCTCTACGCCACAGAGgATGGTTTTGCGCCTCCAGAGGACGAAGAGATTGACGAACAGCCACAAGACCAGGAAGAATACTGATCCTCCTTTTCCTCCTCACTTCAccccaatctctctctctctttctctctttcgttcTTCATCTTTTCTGCCTGCTCTTCCTCCATTTCATctcttctttttctctttttcaccACCCGCAGACTCGAGGGGCGTGGTTTAACAGGCTAATAGATAGAATAGGGGGCATGTCTATGCTAATAAGGTTTGAATTCATGCAGTGAAGCCGACGTTTGATTGGCTTTGGTTGTGTTTTTAAGACAGCACTGAACTCATGATGATGCAGtgtcactttcacacacacacacacacacacacacacacacactgatgtagCCGAGGTTATTATtgactgactgtttttttttattatttgggcTCCAATTAGCTAATTTATTACACTTCATGCTTATGTCACTTTTATTTGCGTATCACGTTCTCCCTCAACTTTTGAAGGGTTTTAGTAGCAGTGGATTAAGCAGATTGtgtattattataactattggAAGTTTTATTGTGCCGCAGATATAAAAAAAGCGAGTTTAAATCTTGCAATTCAGACTTTTTTCTTGCAATAATGACTTTTGGTTACACTTTAATTTAAGGCGTCTTTGTTGAAGTGTAAATATTCATTTAAGtactgagtaatattaattatgtgtacTTACTATATGGTTAGATTATGGTCTAGGGTTAGTTGAATGTAATTACTACAGCAAATACCATGAatgtgtaacaaggacaccttaaataAAGTCTAACCAgactttttttctcagaattttgAGATATAAACTTGACAAGAagtaaaattttactttttttactctGTTAATTCTGGTAAAACCCTAAAATGTTATGCAAATGTTTTTTAACAATGAAATATATCTCAATTTCTACTTTTTTCTTGAACGTAAATGCAGCATAAACATTATTTCATAATTAgcacttatttttaataatgcaattatataatcattattttatttcttgcaaTTTTGGGttaaaagtctgaattgtgaaATGAAAAATTTGCTATTacctttttaattattattattatttttattatttaatatatttccctaaaaatctgaattgtgaaGTGTAAACTTACATTTTAGGAAGAGAAACGCGAGATGTAAGCAGCTCTGGAAGAAATTAATAATGTCAAGATGCAAACTTACAATTATGACCTTATAACTTGAAATTGGGAGATGAAAAATAGGCTGGAAAAGTTTTATTTACCTCCTTTTACATTGATTAATCGGCAGAAATGAGCGTCCATTAGAAGCTTCACTAATGAATTCAATAATGAGTTCAGTTTGCTTCTCCATTCACAAtcagagcaaacacacacacacacactctccatcACGTGAACTCTGAGTCTGTGTGTTTTGCTGATGAGTCATTATTAATAGTGCAGGTgtgagagttttatttatttataaagaagGAAAAAGAGCAACTAACACTGAATGCAAAGAGAAAAAACAGACTTGGCCATTAGTAATGGTGACTCGACTGATGATATGAAACCGGTTTTCTAGCTGctatgttttatttaacatttcattcTCTGGTATATTTTGATTTGATTGCACAGAGCTGTGTGTTGAGCTCTTCACTGTCTCGGCGGCTGTGCGAACGTTCGCAAACATGCATCCATTTGGAGTTTtactatgtaaaataaaaatgtgtgcgGGGAATGA

Function

GO:

id name namespace
GO:0051225 spindle assembly biological_process
GO:1904825 protein localization to microtubule plus-end biological_process
GO:0035372 protein localization to microtubule biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0051233 spindle midzone cellular_component
GO:0005874 microtubule cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0035371 microtubule plus-end cellular_component
GO:0051010 microtubule plus-end binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-6 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in protein localization to microtubule plus-end; regulation of microtubule polymerization or depolymerization; and spindle assembly. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAPRE3 (microtubule associated protein RP/EB family member 3).

Ensembl:

ensembl_id ENSDART00000170012

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055118 lncRNA downstream 11252 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 13824 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 14013 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055114 lncRNA downstream 30571 751290 ~ 753073 (-) True XLOC_028377
TCONS_00055112 lncRNA downstream 49297 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057976 lncRNA upstream 102104 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 102104 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 121894 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 213102 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 224458 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055115 mRNA downstream 3848 764100 ~ 779796 (-) False XLOC_028378
TCONS_00055113 mRNA downstream 23084 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055109 mRNA downstream 98232 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055107 mRNA downstream 393202 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA downstream 393213 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055122 mRNA upstream 838 798696 ~ 815871 (-) False XLOC_028380
TCONS_00055124 mRNA upstream 21070 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055125 mRNA upstream 25540 823398 ~ 858434 (-) False XLOC_028381
TCONS_00055126 mRNA upstream 25546 823404 ~ 837768 (-) True XLOC_028381
TCONS_00055127 mRNA upstream 63586 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055111 other downstream 98225 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 6289 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 139371 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1262666 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1877248 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3694708 4492566 ~ 4496791 (-) True XLOC_028449

Expression Profile

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