RNA id: TCONS_00055120


Basic Information

Item Value
RNA id TCONS_00055120
length 825
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_028379
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 783644 ~ 797858 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGTAAACGTTTACTCCACATCGATGACCATCGAGAACCTGAGCAGACATGATATGCTGGCCTGGGTGAACGACTCTCTGCAGCTCACCTACACCAAGATCGAGCAGCTGTGCTCAGGTGTGGCCTACTGTCAGTTCATGGACATGCTGTTTCCCGGCTGTATTCTGCTCAAGAAGGTGAAGTTTCAGGCCAAGCTGGAGCACGAGTACATCCACAACTTCAAAGTGCTGCAGGCGGCCTTCAAGAGGATGAACGTGGACAAGATCATTCCAGTGGAGAAGCTGGTCAAAGGGAAGTTTCAGGACAACTTTGAGTTCGTTCAGTGGTTTAAGAAGTTTTTTGACGCCAATTACGACGGGAAGGAGTACGACCCTCAGTTAGCGCGGCAGGGTCAGGACGTCACACCTCCACCAAACCCAGGACCCCAGCGGACGTCACCGACAGCACCAAAAACAATGCCCACCCCCCAGCGTGCCATAAGCTCCACCCCCTCAACTGGAATACGACGAAACACACCAATATCACGAAATGGAGGCGACGCCGAGATCATGGAGCTCAACCAACAGCTGATGGATCTGAAATTGACGGTGGACGGTTTGGAGAAAGAGCGAGACTTTTACTTCAGCAAACTCAGAGACATTGAGCTGATCTGCCAAGAGCACGAGAGCGACAGTAACCCCGTCCTGGGAAAAATCATCGACATCCTCTACGCCACAGAGgATGGTTTTGCGCCTCCAGAGGACGAAGAGATTGACGAACAGCCACAAGACCAGGAAGAATACTGATCCTCCTTTTCCTCCTCACTTCAccccaatctctct

Function

GO:

id name namespace
GO:0051225 spindle assembly biological_process
GO:1904825 protein localization to microtubule plus-end biological_process
GO:0035372 protein localization to microtubule biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0051233 spindle midzone cellular_component
GO:0005874 microtubule cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0035371 microtubule plus-end cellular_component
GO:0051010 microtubule plus-end binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-6 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in protein localization to microtubule plus-end; regulation of microtubule polymerization or depolymerization; and spindle assembly. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAPRE3 (microtubule associated protein RP/EB family member 3).

Ensembl:

ensembl_id ENSDART00000164441

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055118 lncRNA downstream 12910 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 15482 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 15671 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055114 lncRNA downstream 32229 751290 ~ 753073 (-) True XLOC_028377
TCONS_00057306 lncRNA downstream 52818 723830 ~ 732484 (-) True XLOC_028376
TCONS_00057976 lncRNA upstream 110317 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 110317 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 130107 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 221315 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 232671 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055115 mRNA downstream 5506 764100 ~ 779796 (-) False XLOC_028378
TCONS_00055113 mRNA downstream 24742 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055109 mRNA downstream 99890 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055107 mRNA downstream 394860 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055122 mRNA upstream 9051 798696 ~ 815871 (-) False XLOC_028380
TCONS_00055124 mRNA upstream 29283 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055125 mRNA upstream 33753 823398 ~ 858434 (-) False XLOC_028381
TCONS_00055126 mRNA upstream 33759 823404 ~ 837768 (-) True XLOC_028381
TCONS_00055127 mRNA upstream 71799 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055111 other downstream 99883 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 14502 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 147584 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1270879 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1885461 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3702921 4492566 ~ 4496791 (-) True XLOC_028449

Expression Profile

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