RNA id: TU2358996


Basic Information

Item Value
RNA id TU2358996
length 279
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G2062734
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21434410 ~ 21434688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTTGTGCGAGCTTGTTTTCTGTTAGTCGAGGTTGTGCGTGTAGTTCTTGTCCGTTTGTGCCCTGTGTTGGGTTGGACATTTTTGTGATTATTTCGCCTGTTGTTTTGGGCGTTAGCATTGGAAAACGAAATAAAGTCCGGTTTGCTCAGTATCCTCTgcgtttgactccacacccaccactcCAGGCGTTGTGACACACAGAGCAAGCAGTAAAGCTTCATAAAACACCCATTTTTGCTCTAAACACCTACAGATTAAatggcagtggtcaccaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2358994 lncRNA downstream 733 21433472 ~ 21433677 (-) True G2062732
TU2358992 lncRNA downstream 11888 21422258 ~ 21422522 (-) True G2062730
TU2358899 lncRNA downstream 12275 21421861 ~ 21422135 (-) True G2062646
TU2358991 lncRNA downstream 12919 21421166 ~ 21421491 (-) True G2062729
TU2358901 lncRNA downstream 116564 21316807 ~ 21317846 (-) True G2062648
TU2359261 lncRNA upstream 34000 21468688 ~ 21469247 (-) True G2062979
TU2359300 lncRNA upstream 98107 21532795 ~ 21556699 (-) True G2063017
TU2359328 lncRNA upstream 149080 21583768 ~ 21616231 (-) True G2063043
TU2359343 lncRNA upstream 181767 21616455 ~ 21636157 (-) True G2063058
TU2359368 lncRNA upstream 205819 21640507 ~ 21679543 (-) True G2063082
XM_021587998.2 mRNA downstream 15042 21414351 ~ 21419368 (-) True LOC110507770
XM_036965791.1 mRNA downstream 20646 21327283 ~ 21413764 (-) True LOC110507127
XM_021587997.2 mRNA downstream 109985 21318465 ~ 21324425 (-) True LOC110507769
XR_005040012.1 mRNA downstream 120636 21311439 ~ 21313774 (-) True LOC110507767
LOC110507126 mRNA downstream 122973 21295518 ~ 21311437 (-) False LOC110507126
XM_036965513.1 mRNA upstream 220442 21655130 ~ 21668508 (-) True LOC110507773
XM_021588002.2 mRNA upstream 249429 21684117 ~ 21693325 (-) True LOC110507775
NM_001246351.1 mRNA upstream 263625 21698313 ~ 21701463 (-) True serpinf2b
LOC110507129 mRNA upstream 266828 21701516 ~ 21730129 (-) True LOC110507129
XM_021588005.2 mRNA upstream 406773 21841461 ~ 22067487 (-) True LOC110507777
TU2358893 other downstream 130282 21297665 ~ 21304128 (-) True LOC110507126
TU2358915 other downstream 161609 21270167 ~ 21272801 (-) True LOC110507765
TU2358911 other downstream 161722 21270167 ~ 21272688 (-) False LOC110507765
TU2358439 other downstream 512035 20914114 ~ 20922375 (-) True LOC110507754
TU2354506 other downstream 3511658 17922342 ~ 17922752 (-) True G2058724
TU2360564 other upstream 1277975 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other upstream 1277975 22712663 ~ 22717020 (-) False LOC110507789
TU2360569 other upstream 1277975 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other upstream 1277975 22712663 ~ 22718106 (-) False LOC110507789
TU2360712 other upstream 1369570 22804258 ~ 22808106 (-) False zbtb16b

Expression Profile