RNA id: TCONS_00055122


Basic Information

Item Value
RNA id TCONS_00055122
length 3509
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_028380
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 798696 ~ 815871 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCACGCACAACAGAAGGAAAATCATCAAATACGGATGATGTCGGGCGGCGGCTCCTCCATGCGGATCCTCATTAAAGGCGGCCGGGTGGTGAATGATGATGTCACAGAGGAGGCAGATGTTTACCTGGAGAACGGGCGGATCCAGCAGGTGGGGCGGGACCTGATGATCCCGGGCGGAGCAAAGGTGATCGATGCGACTGGAAAACTGGTGATTCCCGGCGGCATCGACAGCAGCGTTCACCTGCACCAGACATTcatgaacgcacacacacaggacGACTTCTACAGCGGCAccaaggcgGCGCTGTTGGGCGGCTCCACGATGTTGATCTCTCATGTTCTCCCGGATCGCGGCGCGTCTCTGCTGGATGCTTTTGAGCAGATGCGCGCTCACGCGGATGCTAAAGCCTGCTGCGATTACGCGCTGCACGTTGGCGTCACCTGGTGGGGGCCGAAGGTGGAGCGGGAGATGGAGGTGCTGGTGGGTGAGCGAGGTGTGAACTCCTTCCAGATGTTTATGGCGTATAAAGACACGATGATGCTGAAGGACTCTGAGCTTTATCAGGCTCTGAACACCTGTAAAAACATTGGCGCCATTGCTCGAATCCACGCAGAGAACGGAGAGCTGGTGCTGGAGGGGGCAAAGGAGGCTCTGGATCTGGGCATCAGTGGTCCTGAAGGGATGGAGATCAGTCGACCGGAGGAGcTGGAAGCAGAGGCCACACATCGAGCCATAACTATCGGCAACAGGGCTCACTGTCCAGTGTATTTAGTGAACGTGTCCAGCATGTCTGCAGCTGATGTCATCGGTGCCGCCCGCATGCAAGgTAGGGTGGTCCAGGCGGAGACGACTGTGGCTCATGCAGTGCTCTCTGGGATGCATTATTATCATCAGGACTGGGCTCACGCCGCTGCTCATGTCATAGCTCCGCCCCTCCGGCTCGACCCCAACACCCCCGACAATCTGATTGGCCTGCTGGGAAACGACATCATTAACGTGGTGGCGTCAGATCATCGCGCATTCAGCACCAAGCAGAAGGCCATGGGCAAAGAAGACTTCACGAAGATCCCTCACGGGGCGCCCGGCGTCGAAGACCGCATGAGCGTCATCTGGGAGAGAGGAGTGGTCAGTGGGAAGATGGATGAGAATCGTTTTGTGGCGGTGACGAGCTCAAACGCTGCTAAAATCTATAACCTCTATCCACGCAAGGGCCGTATAATGCCAGGAGCCGATGCGGATGTGGTTGTGTGGGATCCAGACGCCACACGGACGATTTCAGCAAGCACTCAGGCTCAGGGTGGAGACTTCAACCTGTTTGAGGGCCAGCGGTGTCACGGCGTCCCATTGGTGACCATCAGCCGCGGGCGTCTGGTGTGTGAAAACGGCGTCTTCATGTGTGCTCAGGGATCCGGAAAGTTCTACCCGATGAGAGCATTTCCAGATTTCCTCTATAAGAAGCTGATTCAGAGAGAAAAGACGCTGGCTGTGCGTGGTGTGGATCGAGCTCCATATTCGGGCGACGTCGCCTCCGTTATGAGCTCGATTAGGAAGGAATCGGGCTCTCCAGAGGGTGACGTTCCCATGCGGACCGCCGCCACCGCCGCCAGACACACTGGCATACGAGACCTGCACGAGTCCAGCTTCAGCCTGTCAGGCGCTCAGGTGGACGACCACATTCCCAAAAGGTCCTCAGCCCGAATCCTGGCTCCTCCCGGCGGACGCTCCAGTGGAATCTGGTGAAGATCTGGAGTTGGTCTCAATGGCGACTCCTGTATGTCCCTGTCCTTGTGTGCTTGAAGATACTAAATGTATGAAGTGGAGAAAATCACAATCAGAGTCGCATCCAAAGTGCCAAAAGCTGAAAACTGTGCCACATTACAGCGAGAGAGAGGTAGCAGAGCAGCGTTTGGACACATCTGAAAGGTATCACTATTGCCAAATACGACAGTGTTTCATGTTGCCAACATCACctttaaaagggacctattatgttttatttacaagCTGTAAAGTAAGACTCTGATGTCTCtagtgtgtgaagtttcagctcgaaATAGCCCACtaataatgttttctaactctctgaaactgaccctacTTTAaaactttgatcctaattgtgccattttgggggctgtcgctttaaattcaaatgagattgtggtcTTCTtgaaagagggcggagctacaaatgcctgtgcatcagcatagtgACAGCTTTAAAACTCGACTAATGTTGCCTTTGTGAAAATGTAAAGAAGCTCTAATGGATAGACAGCttcttctcactcagggctgtttatgctaatgagagagagagatgggcactagtgggcggggctttccccctctgatgacacgtagtACAAATGGCGaatatcaatcaaagtgtttctgcagactgttttcatcaagtctgattataaaatatAGGGTTAATTCATgttgaccattagaggctggatatattcacacactgctgggTTTTAACCCCTTATaagagtgatttttgcataataggccccctttaaacttctgtgttattttaatagtaaaattaaaatgtgtccAAGCGTTCTTCAGATGTTTATCCAATCAGTCGGGTCGTTCTTCTCCAGATCACTGTTAATAATGTTTGCCAAAAGAGAGATGAGAGGATGAAAGCAAGTATTGTCTGAGTGATTTAAATCGTGTTTCCATAGTTTCTGAGCCAGTCATATATTTTATTGAAATCCACACACACTGATGTTAGTGATTGTGTTTATAGTGATGAAGCCCTTATATGAAAACAGTGTCTGTGACAGATTTTACATATATGTCTTTTACAcacactcaaatatatatatatagtttgttgtTTGTCTTGATTGTATAGTAATGAAATATCTAAAGTGAttgattttattaatgttaacagGCTGATCTGCGTTTATTCCAACACTAACATATTCCACTTACAAATGAATTATTGCTCAACTACAAATCTATTCGATAAACATTACCACTAAGTTATAAGAGGAGCATTTCAGAATATTCTGAATATAAATAACATTCTGAGAAGGGATAACTTTGAGCAAGTcctctattaatattattacaagaTCATAACGTTAAAACAACCATGTGTGAACGTTCCCTGTTTAATCAGCAGTTTATTGAGCTGCACATGTTCACTGAAACTCAGATTTACGCTCATCTCGTGTGTAGAGTCTCGTTTGTGTTCATTATTATTGGTAAATTGTGTGTTATTGTTCCTGTTTTGTGTCCTGATCCAAGCATGAGCTCCTCCAGTAGGGCTGGTTTTATTGGTGCTGTTTTTTAAATGAGCAGTTGTTCATTGCCGGTCTTGATTTGTATGGTTTTGGTGTTTTTCAGGAAAAACAAAGCACTTTGTGAATCggtttgtatttttgtgttgttggACCTGCTGTTGGAATTAGTCAGTCCTGAAAGTGAAGGCTTGTTTTATCAagtgcaaaaataaaatttaaaaactccTTAAAGAAA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0007411 axon guidance biological_process
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050720-4 Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds and microtubule binding activity. Predicted to act upstream of or within axon guidance. Predicted to be located in cytoplasm. Is expressed in central nervous system and trigeminal ganglion. Orthologous to human DPYSL5 (dihydropyrimidinase like 5).

Ensembl:

ensembl_id ENSDART00000067455

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055118 lncRNA downstream 26304 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 28876 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 29065 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055114 lncRNA downstream 45623 751290 ~ 753073 (-) True XLOC_028377
TCONS_00057306 lncRNA downstream 66212 723830 ~ 732484 (-) True XLOC_028376
TCONS_00057976 lncRNA upstream 84091 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 84091 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 103881 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 195089 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 206445 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055119 mRNA downstream 838 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055121 mRNA downstream 865 787066 ~ 797831 (-) True XLOC_028379
TCONS_00055120 mRNA downstream 9051 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055115 mRNA downstream 18900 764100 ~ 779796 (-) False XLOC_028378
TCONS_00055113 mRNA downstream 38136 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055124 mRNA upstream 3057 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055125 mRNA upstream 7527 823398 ~ 858434 (-) False XLOC_028381
TCONS_00055126 mRNA upstream 7533 823404 ~ 837768 (-) True XLOC_028381
TCONS_00055127 mRNA upstream 45573 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055128 mRNA upstream 46177 862048 ~ 890220 (-) True XLOC_028382
TCONS_00055111 other downstream 113277 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055131 other upstream 121358 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1244653 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1859235 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3676695 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3730338 4546209 ~ 4570805 (-) True XLOC_028452

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000068_00663458_00672380.mRNA False 1573 mRNA 0.59 11 CI01000068 663433 ~ 672380 (-)
bowfin (Amia calva) AMCG00004296 True 4930 mRNA 0.43 10 CM030121.1 41949371 ~ 41964474 (+)