RNA id: TCONS_00055123


Basic Information

Item Value
RNA id TCONS_00055123
length 662
RNA type nonsense_mediated_decay
GC content 0.54
exon number 4
gene id XLOC_028380
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 798696 ~ 815871 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cTGGAAGCAGAGGCCACACATCGAGCCATAACTATCGGCAACAGGGCTCACTGTCCAGTGTATTTAGTGAACGTGTCCAGCATGTCTGCAGCTGATGTCATCGGTGCCGCCCGCATGCAAGGTCAGTTTATGTATGATCAGAAATGTTTATAGTGCTTATAAACACACTGATGTCGATAACGCAGCGTTTGagtgtctgtctctctgtctgtgtgtgtgtgctccaggTAGGGTGGTCCAGGCGGAGACGACTGTGGCTCATGCAGTGCTCTCTGGGATGCATTATTATCATCAGGACTGGGCTCACGCCGCTGCTCATGTCATAGCTCCGCCCCTCCGGCTCGACCCCAACACCCCCGACAATCTGATTGGCCTGCTGGGAAACGACATCATTAACGTGGTGGCGTCAGATCATCGCGCATTCAGCACCAAGCAGAAGGCCATGGGCAAAGAAGACTTCACGAAGATCCCTCACGGGGCGCCCGGCGTCGAAGACCGCATGAGCGTCATCTGGGAGAGAGGAGTGGTCAGTGGGAAGATGGATGAGAATCGTTTTGTGGCGGTGACGAGCTCAAACGCTGCTAAAATCTATAACCTCTATCCACGCAAGGGCCGTATAATGCCAGGAGCCGATGCGGATGTGGTTGTGTGGGATCCAGACG

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0007411 axon guidance biological_process
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050720-4 Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds and microtubule binding activity. Predicted to act upstream of or within axon guidance. Predicted to be located in cytoplasm. Is expressed in central nervous system and trigeminal ganglion. Orthologous to human DPYSL5 (dihydropyrimidinase like 5).

Ensembl:

ensembl_id ENSDART00000134323

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055118 lncRNA downstream 31755 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 34327 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 34516 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055114 lncRNA downstream 51074 751290 ~ 753073 (-) True XLOC_028377
TCONS_00055112 lncRNA downstream 69800 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057976 lncRNA upstream 91509 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 91509 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 111299 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 202507 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 213863 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055119 mRNA downstream 6289 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055121 mRNA downstream 6316 787066 ~ 797831 (-) True XLOC_028379
TCONS_00055120 mRNA downstream 14502 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055115 mRNA downstream 24351 764100 ~ 779796 (-) False XLOC_028378
TCONS_00055113 mRNA downstream 43587 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055124 mRNA upstream 10475 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055125 mRNA upstream 14945 823398 ~ 858434 (-) False XLOC_028381
TCONS_00055126 mRNA upstream 14951 823404 ~ 837768 (-) True XLOC_028381
TCONS_00055127 mRNA upstream 52991 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055128 mRNA upstream 53595 862048 ~ 890220 (-) True XLOC_028382
TCONS_00055111 other downstream 118728 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055131 other upstream 128776 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1252071 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1866653 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3684113 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3737756 4546209 ~ 4570805 (-) True XLOC_028452

Expression Profile

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