RNA id: TCONS_00055125


Basic Information

Item Value
RNA id TCONS_00055125
length 2004
RNA type mRNA
GC content 0.55
exon number 6
gene id XLOC_028381
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 818928 ~ 858434 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACATCATCTGCAGCCAGTGCAGTCGCTCGGCATCATGGGAGCAGGTGCTGGAATCTGCAGAAGTCAAAGAACTTTGCTGAAAACACCATGAATGAGCTGTTGGGTTGGTACGGCTATGATAAAGTGGACCTGCAGGACTCAGAGGCTGCAGACGCACGAAACCGAGTCAAACGCAACCATATATCGGTTCTTAAAgAGAACGCTGTGCCAAAGCCACTCAATGTGGAGAAGAAGATCCCTCCATCATCATCCtcgtcttcatcatcatcatcctcctgtTCATCAGAGCCGGTCAGGAATGGAGATCAGGATCCTCCAACTGTTCCTGTGTCTCCCTCTGCATCTTCAGCCTCGCCACGACACAACATGAACGTCATCGTGCCGCTCATCAAACCCtccgcagtgGAGGACGTCCAGAACGTGCAGATCGTGTGTGTGTGGTGTCAGAAGGAGGGAATGAAGCGTTACTCTCTGCTCATGGGCTCTGAACTCAAGAGTTTTTGCAGCGAGAAGTGTTTCGCAGCCTGTCGACGCGCATACTTCAAACGCAACAAGGCTCGAGATGAAGATCGCCATGGTGACAAGTCTCCGTCTCCTGGCCAAACTCTGGACACGCCCACAAGACTGATGCTGAAgatgaacaacaacaacagcagcacacGTGTGTGTGACTGGTGTAAACACATACGCCACACTAAAGAATACCTGGACTTCGGTTCGGGTGAGGAGCGACTGCAGTTCTGCAGCACCAAATGCCTGAACCAGTACAAGATGGACGTGTTTTACCGGGAGGCTCGGGCTGCGCTCACCAGCTCCAAAGAGGAAGAGAACCACCCGAAACCCGCAGCCACCAGCGAAAACCAGACACTGCTCACTCCGGACGCCTGGGAGTCTCCAGCGAAAAGCCTCTCGCCCCAAACCCCAACAGCATCTGCATTGCAGAGAACGCCTGTTTGCATGCGGGTTCAGATGGCCACTTCGCCCAAATCACCCACTGGTCCGTCTCAGGGTACACCAGAGCAGCCACGCCCACCTCACATGCCCCTCCCCTTTATACGTCCACCCCTGCACGCCCAGAGCCTGCGAAGCCCCACCCCTAATCTCCCTCATAACCCGCCTCACCCTCTTAGCCCCACCCAAAGGGTGCCATTTGCCCCGCCCCCTCACTACCCCCTCCCATACCTGCCCCTCCACCCAACATTTCCACCACAAATGCCTCCGCCGTGGCCCCAGCCCATGATGATGATGCCTTACCCTGTGTTTGTACCCATTCCTATCCCAATCCCTATCCCCATCCCGATTTCCCCTCAGAACAGCCACCGAGGGGTCATCCGAAGCCTTCAGGAGCCGGAAAAAGAGCCCGCTGGGAGTCAGAGGGTAAAGACGGAGCGGTGTGTTTCTCCAGTGTCTGCATCCGAGCGGCAGGTCATTCAATGTCTGCGCAGAGACTCTGTGAAAGAGGAGAGAAATGACACACACATTCAGACTCTACGCAAAGCACTTTACACCTCTGTCCTCACATCCACAGCCTCAGCCTCATTGGACGGCAGAATCGTTAGTCCCGCCTCTTTGTACTCATTGGCTCGCTCCACTGCCATTCAGGCTGCCTCGTTTTCATTGGACAGCAGCTCCGGCCAGATCCCGTCGCCTCTGTCTGACTGTGAGGATGTGAAGGAGAATAGCTATTTATGTGGGCGGGGCAATGACTCAGCCAATCAGTGGACGGCAGAGCAAATGGACTGTCAGAGTGACCAATCAAAAGAGGGCAAAGGGGAGGAGGAAACGCCTCAGGATGTGGAGCACACCTACGCACGGTCGGTGCCGCCAAAACTACGGGAGAAAAACACACACGTGAACACTCAAACACATTTACACACGCAAATCTGGGAGAAAAACACACAGGTGGATGAGCTGGGACCCGAGCAGAGCGTGCGGGACGATGCAGAGCCGGCTGTGAAGAGGCGATGCTTAAGGATCAGAGACCAGAACAAATGAGCGTGG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-8 Predicted to enable metal ion binding activity. Orthologous to human SOBP (sine oculis binding protein homolog).

Ensembl:

ensembl_id ENSDART00000006961

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055118 lncRNA downstream 51006 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 53578 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 53767 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055114 lncRNA downstream 70325 751290 ~ 753073 (-) True XLOC_028377
TCONS_00057306 lncRNA downstream 90914 723830 ~ 732484 (-) True XLOC_028376
TCONS_00057976 lncRNA upstream 41528 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 41528 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 61318 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 152526 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 163882 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055122 mRNA downstream 7527 798696 ~ 815871 (-) False XLOC_028380
TCONS_00055119 mRNA downstream 25540 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055121 mRNA downstream 25567 787066 ~ 797831 (-) True XLOC_028379
TCONS_00055120 mRNA downstream 33753 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055115 mRNA downstream 43602 764100 ~ 779796 (-) False XLOC_028378
TCONS_00055127 mRNA upstream 3010 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055128 mRNA upstream 3614 862048 ~ 890220 (-) True XLOC_028382
TCONS_00055129 mRNA upstream 47049 905483 ~ 908821 (-) True XLOC_028384
TCONS_00055130 mRNA upstream 71123 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055132 mRNA upstream 99617 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055123 other downstream 14945 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 137979 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055131 other upstream 78795 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1202090 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1816672 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3634132 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3687775 4546209 ~ 4570805 (-) True XLOC_028452

Expression Profile

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