RNA id: TCONS_00055127


Basic Information

Item Value
RNA id TCONS_00055127
length 3425
RNA type mRNA
GC content 0.50
exon number 20
gene id XLOC_028382
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 861444 ~ 890220 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCTGCAATGACACCAGGCTCTAAAACAACTTCAGGAGACCCTAACCTCACTGTATTAGCAGATAGAAGTGATTCCTCTCCTCCTAGTGTTAGCCACCCTATTTCCCAAGTTGTATTGGAACCAACTAAGAATGATGGACTTTCGATGGAGTCTAAAAAACCCAATATAAATGATACACCTGTCTTGATACCTGCCCCCAAAACAGTTTCAGGATACACTAAAGATTCTTTGCATTCTAGTTCTCAGTCTGCACTGAAAGCTACTAAGGACCATGGACCTACTCTGACACCTGAGTTGAAAAGAGCAGACCCTCCTGTCACAATGCTATCAGACACTAATTCACCACTTCTTAACAGTATCCAGACTAgtagtaatgttgttttgcaaCCCGATGGTCCAACTCTGAGTATTGACCAGAAAACAACACCAGCAGTCCCCAGTGTGACTACAGCAGAAAACGCTAGTGCTCCACCACCACTTCCATCTTTTGATGACATCAAGTTGCCCAGTTACCTGGATACATTTCTTCCAAAGGAACCAGGAAAAGATCTGCCATCGAATAAGATCAACTCACTGGCAGCTAAAGAAAGTGCTTCCATACCCGGTGTAGTGGATCTCAAAAAGTCTGATGTAGCTGACAGAAAAATATCAGAAGTTCCACCTGCACCTCAAGTTCCTCAAATCCCTCAAGCTGCACCACAGAGGGAACTCCCAAATATTCCAACTTCTCGTGGAATCCATCGACGTCCTGGAAAGATCGTGATATTTGAGCACCATCAGTTCAACGGACAGTCCTTTGAGTTTTACAGGGACCAACCTGATGCTACACACATGCCTCTGTCCACTGTCATATCCATCAAAGTGGTTAGAGGATGCTGGATATTGTATGAGAAACCAGGATTTGAAGGACGATCCATTCCGCTGGAAGAGGAAGGCATTATTGAACTGCCCAATCAATGGGCAGAAGAAGGGGAAGAAATCTCTGCCCCTGTGGTCATTGGCTCGATTCGACTGGCTGTCAAAGACTACGCTACTCCCCGGATAGAGCTGTTCACGGAGCCCGCAGGCCGGGGCCGCAGCTCTGAGTTTGTGGATCACGCAGAAGAAGTGAGCAGCTTCGGTCTTCCTCAGAGCACAGGATCTATTAAAGTCCACAGTGGTCTGTGGCTGGTTTACAGTGATCCGGGTTTCCAGGGTCTGCTGGCGGTTCTGGAGGCTGGAGAATATCCTTTTCCAGAGGACTGGGGTTTCCCAGCTCCAGCCGTGGGCTCTCTGAGGCCTCTGCGCATGGGCTGTCTGAAGGTGGAGAAGCCGAACGCAGTGAAGGCTGTTTTGTACGAAAAGGCTGGTTTTAAGGGCCGATGTGTGGAGGTGCAGGGAGACCTGTTTTCCTGCACAGAAACAGACACAAATAATTCAGAAAATCACGGATTAAATGGTGTGGAGTCACTGAAGATCCTCGGAGGCCTGTGGGTGGGATACGAGCACGAGGGTTTCGATGGACAGCAGTTCATTCTGGAGGAAGGAGAATATTTAGACTGGAGCGACTGGTGCGGGACAAGCCAGAAACTGCTCTCGCTGCGGCCGCTGCTGATGGATTCTTCTCCTCCTCATGTGAAGATGTTTAGTGAGCTGGATTTCTCAGAGCGCGGTGTCAGTATCGACCTCCTGGAGCCGCTGGAAAACTTCGCTAACACACACTACGGCACTCAGACCCGCTCCATCGAGGTCCTGGCCGGAGTctggcTGGCGTTCGAGGCTCCTGGTTTCTCGGGCCAGCAGTATGTGCTGGAGAAGGGTCTGTACGGAGCACCGGAGGACTGGGGTGCGTCAGACAGCCGGATCTGCTCTGTGATCCCAGTGATGGTGGAGCGTGTGGAGAGCTGCTGCCACTTCCAGatgGAGCTGTTCTCTGAGTGTGACTGCAGAGGAGCGTCTGTGCTGCTGCAGGACTCATTACCCATAATGCCCCAGGGCTTCAGCGCGCGCTCCTGCAGGGTCCTGTCTGGCAGctgGCAGGTGTTTGCTGCTCAGAGTTTCTCAGGTGTTCAGTGTGTTCTGGATGAAGGTGTGTATCCGGATCTGAGGACGATGGGCTTCATGCAGCTCCACACAGCAGTGCAGTCTCTCCAGCCAACCGGACACgagttTTCAGTGCCCTCAGTGGTTCTGTTTGAGCGCTGTGGACTCAGAGGCCGGCGGACGCTCCTGAAGTGCAGCTCCGTCAACCTGCAGCTCACCGACAGCTGCACCAGAGTCTGCTCTGTGCTGGTGGAGGGCGGCatGTGGGTTCTGTATGAGGCCAACAACTTCAGAGGGTCCCAGATTCTGCTGAAGCCAGGGGCCATTCCTGATTGGCATAAATTCTCCTCCTGGCAGCGAATTGGATCACTCCGACCACTTATACAGAAACAAATGTATTTCCGCTTACGAAACAAAGAGTCTGGGCTTCTGATGACGGTCACCGGCTCACCTGAAGACGTCAAACTGATGCGCATACAGGTGACGGAGGAGGCGGGCGGAGACAACCAGATCTGGAGCTATCAGGACGGACACCTGCAGTGCAAGtgcgtGCTGGATTGTGTAGTGGACTCGGCCTCTGCTGTTCTTCTGTCTGGATGTCGAGTGGTTTTGTCTTCAGACGTCTCTCGGCCGCAGCAGCTCTGGAACATCACGAGCGACGGCTTCATCCGCAACAACAGCTCACCTCAACACGTGCTGGAGGTCAAAGGAGGTCAACAATTCGACAAAAACCAGATTATTCTTAATGAATTCCACCCAAATAAAGCGAGTCAGCAATGGTCTGTGGAAATCCTGTGAGCAGATTCACTTCATGAGCTCCGTCGGTTGACCCACTGTTCTGTGGCGGAGCTGCACCAGGGGGACCAGTGTCCTGTGGGGCAGCTGCACCAGAGGGACCACCATCTGCATTTATTATGGAAACCTCATTCCCAGGAGAACCAGTGGATTTAATATGATCACAGTTAGCTGGACATGgtgttatttttataaatgaactATCTATCCAAGCTGCCTCTCGAAAGCACACACTTGAACGGTGCTTTATGTAAATTGTTTTAATGTACTTGTATGGATGCCTGTATAAAACACAACCTGCGtgtttatatgtaaatgtttGCTTTGATAATTAACTGCAGCTTCATTCTGATCATTGAAACGTGTGATCGCGTCTGATTGGTCCGTGAGGATTCGGTGTCTGCTGATTGGCTGTCTGGGGATTCAGATGTTCTGTGTCCAGTGAAATGAGTCCGCCGGTCGCTTGTTTTTTCACAGACGAAATACAGCTCAGAGTCTGAACAAACACTCTGTAAATGTCACAAACATACGCTCTTCCAGGAATGCTAGTACAATGTTTGTTCAGAGTGATCCGGTCTTTAATAATGCTCTTAAAACATTAGCACTA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7179 Is expressed in diencephalon; midbrain; otic placode; and otic vesicle. Orthologous to human CRYBG1 (crystallin beta-gamma domain containing 1).

Ensembl:

ensembl_id ENSDART00000149162

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055118 lncRNA downstream 89052 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 91624 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 91813 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055114 lncRNA downstream 108371 751290 ~ 753073 (-) True XLOC_028377
TCONS_00057306 lncRNA downstream 128960 723830 ~ 732484 (-) True XLOC_028376
TCONS_00057976 lncRNA upstream 19547 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 19547 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 39337 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 130545 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 141901 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055125 mRNA downstream 3010 823398 ~ 858434 (-) False XLOC_028381
TCONS_00055124 mRNA downstream 23625 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055126 mRNA downstream 23676 823404 ~ 837768 (-) True XLOC_028381
TCONS_00055122 mRNA downstream 45573 798696 ~ 815871 (-) False XLOC_028380
TCONS_00055119 mRNA downstream 63586 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055129 mRNA upstream 25068 905483 ~ 908821 (-) True XLOC_028384
TCONS_00055130 mRNA upstream 49142 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055132 mRNA upstream 77636 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055133 mRNA upstream 101613 982028 ~ 991043 (-) False XLOC_028388
TCONS_00055134 mRNA upstream 105545 985960 ~ 992148 (-) True XLOC_028388
TCONS_00055123 other downstream 52991 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 176025 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055131 other upstream 56814 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1180109 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1794691 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3612151 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3665794 4546209 ~ 4570805 (-) True XLOC_028452

Expression Profile

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