RNA id: TCONS_00057977


Basic Information

Item Value
RNA id TCONS_00057977
length 965
lncRNA type intronic
GC content 0.40
exon number 3
gene id XLOC_028383
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 899962 ~ 904022 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctctgaggaatatttccagttgcTTGTTAAATCTActccatgaaggattaaggctgtTCTGACGGCAAAAGGGTTCCAACCCGCAGGAGGCGCTTCAGAGACACTGCTGATCCTCCCACAGCAAAAACAGGATGGATTTCAGCCCTCTCTGGCATCTGGATTATATTTGAGTGTGTGGTTTCAGTGAGTCATGCGGAAACACTGCGCTTTCACCTCTCTCACACTCGCTGTATGAGACACCAACTCAACATCATCTCTACTGTTAGCTAGACGACACACAGCACAGTGACGTTACAGTGAATGTGAAGATGCTCCAGTTCCTGTCGTTAGATGTGATCAGGTCTCATTACACCACTGGAGCATTGGAGATTCTGCTCAAATTACCTGTCAAGTCATAAGTTGTGAaaaatggaaaatatattttgacaaacattcttctttctttctttcgttctgtTCTGtcttttatctatccatccatccgtcattcTTTCTATCTCTATTCATCCATTTGTCCGTCCGTCCAActatcaaccatccatccatccattgatctgtctgtctgtctgtttgtctgtctgtctgtctgtctgtttatctgtctattTGTGTCGATCTATCCATATCACCgtcattctatctatccatccgtcattccatccatccattcgttgttctatctgtttgtttgtctgtctgtctgtctattaatctttatctatctatctgtgtgtctgttgatccatctgtccatccatccatctatacgtccatctgtctgtcttgtTTGAATATGTTTATTGGCAATATACATAACGTCAAGAAAGCAAACGTGCAATAAATATCAGAACATTCCATTTTAGCAATTAGCAAGAAGCTATTTATTAATGTGTTCAGCTACAATAAAGAAATGCATTTCAGAAGAAAGAATATAAGAATAAGAAAGAAATCCACCTTCCTgcat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055118 lncRNA downstream 127570 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 130142 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 130331 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055114 lncRNA downstream 146889 751290 ~ 753073 (-) True XLOC_028377
TCONS_00057306 lncRNA downstream 167478 723830 ~ 732484 (-) True XLOC_028376
TCONS_00057978 lncRNA upstream 15730 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 106938 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 118294 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00057980 lncRNA upstream 124814 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057981 lncRNA upstream 150639 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00055128 mRNA downstream 9742 862048 ~ 890220 (-) True XLOC_028382
TCONS_00055127 mRNA downstream 19547 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055125 mRNA downstream 41528 823398 ~ 858434 (-) False XLOC_028381
TCONS_00055124 mRNA downstream 62143 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055129 mRNA upstream 1461 905483 ~ 908821 (-) True XLOC_028384
TCONS_00055130 mRNA upstream 25535 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055132 mRNA upstream 54029 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055133 mRNA upstream 78006 982028 ~ 991043 (-) False XLOC_028388
TCONS_00055134 mRNA upstream 81938 985960 ~ 992148 (-) True XLOC_028388
TCONS_00055123 other downstream 91509 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 214543 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055131 other upstream 33207 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1156502 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1771084 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3588544 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3642187 4546209 ~ 4570805 (-) True XLOC_028452

Expression Profile

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