RNA id: TCONS_00057978


Basic Information

Item Value
RNA id TCONS_00057978
length 2010
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id XLOC_028385
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 919752 ~ 921761 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAATGTTTTGTACAGTGTAAATCGTTCTCACATTTGTCACCAACAGAGACATTTTCATGGTAACCGCTCTCATAGTGTTAAGAAAATGTTCTGAGACAACATTAAAGCAGCTTCCTTTAATGCGGTTTGTACCTGAACGTTCTAAaaactgttaaaagaacattatAAGAAGAATGTCACTTTGATGTTATAGAACATTCTAAAAGCGGAATACATTCTGACATCACTACTGGAATCTCTTTATGATGATAGTGTATTGCACACTGTTGAAAATACCTGCTCatgaacagtttccgtatttAGTGATTCACATGTATTTTTGGGTTtatttgtgaattgcattatgggatgcttatctctgctctgtccacttctgatggtgaaaattcaactccacagtttaacaaagtgacttttattgaccttttagtagtttgaaataatataatgtaaaaaaaaaaaaataatacctagataaataagtctgtaaaatagcacAAAATGTGCTGCAgattattacaaggtgtttgtagtgtaatatacaacaccaccccagacaatatagcactgtaGACTATTAAACATGTTCAGAAaagtccctttttttttttttttttacttttcatggTTAAAAGATGTAAGGAAGATCAAAATCCCGTAATGTAATCcagaagcagaaataaatgggggaaataaaaaaaataaaataaaaacatgaatcgcaaaatatggaaaattttacagacattttttacaatgtacataaTAAGCATAATACATTCTTATGCGTGTACATAATAAATTCTTTTAATGTTGAGAAAATGTTCTGGAAACAACATTAATGTTAACCCatggattattattatgattattatttacacACTAAAACCTAAATAATGATGTGTCATGATCAGAAGTAAGTAACTAATGTTAGGCTACATCAGCGAACGCTACAAGCAAACCAAAGTTAGATCAATAGATGTAGACATATTGGTTAGTTAACAAGGAGTTGTCAAACCTTAGCTTTCCATTTGAATTAGTGATAATTAGCATGTTTTGGGGGTTCATGAAGATAGtctattctgaaatattttaagtAGTACATTTTAATTAGACATGTTGGGGTTCATCTCTTTGTAGATAACAAATGACAAAGTGCTGTAGGTGAGATTTGTGTGACAAGCCAGCGCCTTCATGGTtgtgttaattaaaataaattaacaaactacGGTTGTAAAGGTGAAGTGACAGGAACCGGAAGTGTCTGTGGCAGCGCGCGGTTAAGGTAaacaaaagatttgtttaaatattttaaaaatgtttcagagTCCTCGAGGGaaagctaataataatagtaacgttaataacaacaacaacagcctaataataatgatacaaaatCAGAAACAAAGTGGCCTACATAGTTTTATATTAGCTGAACAGCTGAAACAGTTTCTAAAAACAGAAGAAGCATACAGACGCGTATTTACATCCAGATTATACTGAATCCCACGACAAACGGTTATAAAACAATCAGAAATTCAACTATTAGCTTAACAGCACATCCATTCATTAGCATAAGCATTATCAGGCAGAGGAATTATTGCTCATTATCGAAATCCTCTGTGTTTATGAATAAATCAATGCTAGAGACTCTAAATAAAACACCACTAGATAAACAAATCTGCAACACATTCGCGTTGTTTTCAAATGTGGAAATATGAGTTATTTAAAAGGAGAATCAGCGGAGATCAGCAGAATATAACAACATATGAACAGTTTATGTTCATCACAAGTGTGTTTAAAGAGAAGTAATCTGACTGAATTATTTATCCACAGACCAAATTCAGTGGTGAAGCGGCGTCCCCTGCTGCCCACTATAGAAATGAATACCTAGAGATGTTCTCCCATGTTTTTGTCTGAAAAAAGTATAGTCGAAGTAGTAAACGTTTATACAAGATGTAGCATTTAAacagtgtatacagttgaagtcagaattgtgtccccc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057977 lncRNA downstream 15730 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057976 lncRNA downstream 15764 899962 ~ 903988 (-) False XLOC_028383
TCONS_00055118 lncRNA downstream 147360 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 149932 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 150121 769043 ~ 769631 (-) False XLOC_028378
TCONS_00057979 lncRNA upstream 89199 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 100555 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00057980 lncRNA upstream 107075 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057981 lncRNA upstream 132900 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057982 lncRNA upstream 150506 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00055129 mRNA downstream 10931 905483 ~ 908821 (-) True XLOC_028384
TCONS_00055128 mRNA downstream 29532 862048 ~ 890220 (-) True XLOC_028382
TCONS_00055127 mRNA downstream 39337 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055125 mRNA downstream 61318 823398 ~ 858434 (-) False XLOC_028381
TCONS_00055124 mRNA downstream 81933 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055130 mRNA upstream 7796 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055132 mRNA upstream 36290 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055133 mRNA upstream 60267 982028 ~ 991043 (-) False XLOC_028388
TCONS_00055134 mRNA upstream 64199 985960 ~ 992148 (-) True XLOC_028388
TCONS_00055135 mRNA upstream 92787 1014548 ~ 1015896 (-) True XLOC_028390
TCONS_00055123 other downstream 111299 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 234333 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055131 other upstream 15468 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1138763 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1753345 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3570805 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3624448 4546209 ~ 4570805 (-) True XLOC_028452

Expression Profile

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