RNA id: TU2361521



Basic Information


Item Value
RNA id TU2361521
length 223
lncRNA type intronic
GC content 0.46
exon number 1
gene id G2065036
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 23042526 ~ 23042748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGCATAGGTTCCATTTCAAGACGTGTAATTGAAGGTAATATCAAGGTGTGCCTGTAACTGAGATGACTGATCCCTTTGGACCATGGAGGCACAGGAAAGGAAGCAGCCAGAAGTAAAGTTGAGGAGAATGTTTCTATGTCAGTGGGCTCATCTTAAAGCCACCCTGATGGAATGCTCGCCTCTCTTCTCTTATCCCCTcttctcctatcctatcctctcctca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2361520 lncRNA downstream 1147 23041101 ~ 23041379 (-) True G2065035
TU2361518 lncRNA downstream 5289 23037009 ~ 23037237 (-) True G2065033
TU2361515 lncRNA downstream 11074 23031237 ~ 23031452 (-) True G2065030
TU2361508 lncRNA downstream 20770 23021531 ~ 23021756 (-) True G2065024
TU2361501 lncRNA downstream 31703 23010408 ~ 23010823 (-) True G2065017
TU2361522 lncRNA upstream 921 23043669 ~ 23043905 (-) True G2065037
TU2361524 lncRNA upstream 2675 23045423 ~ 23045692 (-) True G2065039
TU2361528 lncRNA upstream 9442 23052190 ~ 23052653 (-) True G2065043
TU2361530 lncRNA upstream 12963 23055711 ~ 23055927 (-) True G2065045
TU2361533 lncRNA upstream 20484 23063232 ~ 23063442 (-) True G2065048
XM_021588052.2 mRNA downstream 124036 22810667 ~ 22918490 (-) False ncam1b
XM_021588056.2 mRNA downstream 124036 22810667 ~ 22918490 (-) False ncam1b
XM_036964746.1 mRNA downstream 124036 22810667 ~ 22918490 (-) False ncam1b
XM_036964747.1 mRNA downstream 124036 22810667 ~ 22918490 (-) False ncam1b
XM_021588057.2 mRNA downstream 124037 22810667 ~ 22918489 (-) False ncam1b
XM_021588041.2 mRNA upstream 121118 23163866 ~ 23194461 (-) False arhgap32a
XM_021588040.2 mRNA upstream 121118 23163866 ~ 23197363 (-) False arhgap32a
XM_021588043.2 mRNA upstream 121118 23163866 ~ 23197363 (-) False arhgap32a
XM_021588045.2 mRNA upstream 124297 23167045 ~ 23197366 (-) True arhgap32a
XM_021588048.2 mRNA upstream 159766 23202514 ~ 23276496 (-) False igsf9ba
TU2360712 other downstream 234420 22804258 ~ 22808106 (-) False zbtb16b
TU2360713 other downstream 234420 22804258 ~ 22808106 (-) True zbtb16b
TU2360569 other downstream 324420 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other downstream 324420 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other downstream 325506 22712663 ~ 22717020 (-) False LOC110507789
TU2361952 other upstream 660415 23703163 ~ 23705965 (-) True G2065425
TU2362713 other upstream 720951 23763699 ~ 23765479 (-) True G2066096
TU2362745 other upstream 764990 23807738 ~ 23808909 (-) True G2066126
TU2362913 other upstream 1093429 24136177 ~ 24181820 (-) True pcp4b
TU2364780 other upstream 2775891 25818639 ~ 25834101 (-) True G2068043

Expression Profile