RNA id: TU2361528



Basic Information


Item Value
RNA id TU2361528
length 464
lncRNA type intronic
GC content 0.45
exon number 1
gene id G2065043
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 23052190 ~ 23052653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agatctggccgtccctctaaattttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtgtcaagaagaaagccatttcttaaagatatccatcaaagtgtcgtttaaagtttgctaaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaatgtaactttttggcaacaatgcaaaacattatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctggttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2361524 lncRNA downstream 6498 23045423 ~ 23045692 (-) True G2065039
TU2361522 lncRNA downstream 8285 23043669 ~ 23043905 (-) True G2065037
TU2361521 lncRNA downstream 9442 23042526 ~ 23042748 (-) True G2065036
TU2361520 lncRNA downstream 10811 23041101 ~ 23041379 (-) True G2065035
TU2361518 lncRNA downstream 14953 23037009 ~ 23037237 (-) True G2065033
TU2361530 lncRNA upstream 3058 23055711 ~ 23055927 (-) True G2065045
TU2361533 lncRNA upstream 10579 23063232 ~ 23063442 (-) True G2065048
TU2361536 lncRNA upstream 15149 23067802 ~ 23068046 (-) True G2065051
TU2361541 lncRNA upstream 22428 23075081 ~ 23075304 (-) True G2065056
TU2361542 lncRNA upstream 23484 23076137 ~ 23076355 (-) True G2065057
XM_021588052.2 mRNA downstream 133700 22810667 ~ 22918490 (-) False ncam1b
XM_021588056.2 mRNA downstream 133700 22810667 ~ 22918490 (-) False ncam1b
XM_036964746.1 mRNA downstream 133700 22810667 ~ 22918490 (-) False ncam1b
XM_036964747.1 mRNA downstream 133700 22810667 ~ 22918490 (-) False ncam1b
XM_021588057.2 mRNA downstream 133701 22810667 ~ 22918489 (-) False ncam1b
XM_021588041.2 mRNA upstream 111213 23163866 ~ 23194461 (-) False arhgap32a
XM_021588040.2 mRNA upstream 111213 23163866 ~ 23197363 (-) False arhgap32a
XM_021588043.2 mRNA upstream 111213 23163866 ~ 23197363 (-) False arhgap32a
XM_021588045.2 mRNA upstream 114392 23167045 ~ 23197366 (-) True arhgap32a
XM_021588048.2 mRNA upstream 149861 23202514 ~ 23276496 (-) False igsf9ba
TU2360712 other downstream 244084 22804258 ~ 22808106 (-) False zbtb16b
TU2360713 other downstream 244084 22804258 ~ 22808106 (-) True zbtb16b
TU2360569 other downstream 334084 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other downstream 334084 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other downstream 335170 22712663 ~ 22717020 (-) False LOC110507789
TU2361952 other upstream 650510 23703163 ~ 23705965 (-) True G2065425
TU2362713 other upstream 711046 23763699 ~ 23765479 (-) True G2066096
TU2362745 other upstream 755085 23807738 ~ 23808909 (-) True G2066126
TU2362913 other upstream 1083524 24136177 ~ 24181820 (-) True pcp4b
TU2364780 other upstream 2765986 25818639 ~ 25834101 (-) True G2068043

Expression Profile