RNA id: TU2361552



Basic Information


Item Value
RNA id TU2361552
length 273
lncRNA type intronic
GC content 0.53
exon number 1
gene id G2065067
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 23088921 ~ 23089193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCCTGTACTCCCCTGTACCTGGAGCACATTAGGCAGGAGTTATGAGGTGCCAGCCAGGCTGTGATTAGATGTCATGGCTGTCGCTCTGCTTAGACAGCACTGATAGACAGATTTCAGGGGAAATGCGTGTGATGCTATTCCCTGCAAGTGGCGGCCTCCACCGCAATCTGTCAATCATAGAGGATGAGGCCAGACAGGCCCACCGTCCTCCAAATAAAGCCTGTCCTTGTCTGGGTCTGCTCTCCTACTCTCCTAACCCATATTCCTTAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2361542 lncRNA downstream 12566 23076137 ~ 23076355 (-) True G2065057
TU2361541 lncRNA downstream 13617 23075081 ~ 23075304 (-) True G2065056
TU2361536 lncRNA downstream 20875 23067802 ~ 23068046 (-) True G2065051
TU2361533 lncRNA downstream 25479 23063232 ~ 23063442 (-) True G2065048
TU2361530 lncRNA downstream 32994 23055711 ~ 23055927 (-) True G2065045
TU2361554 lncRNA upstream 3037 23092230 ~ 23092432 (-) True G2065069
TU2361560 lncRNA upstream 8424 23097617 ~ 23102609 (-) True G2065073
TU2361614 lncRNA upstream 73028 23162221 ~ 23162505 (-) True G2065112
TU2361634 lncRNA upstream 110188 23199381 ~ 23199863 (-) True G2065128
TU2361592 lncRNA upstream 113204 23202397 ~ 23209931 (-) False igsf9ba
XM_021588052.2 mRNA downstream 170431 22810667 ~ 22918490 (-) False ncam1b
XM_021588056.2 mRNA downstream 170431 22810667 ~ 22918490 (-) False ncam1b
XM_036964746.1 mRNA downstream 170431 22810667 ~ 22918490 (-) False ncam1b
XM_036964747.1 mRNA downstream 170431 22810667 ~ 22918490 (-) False ncam1b
XM_021588057.2 mRNA downstream 170432 22810667 ~ 22918489 (-) False ncam1b
XM_021588041.2 mRNA upstream 74673 23163866 ~ 23194461 (-) False arhgap32a
XM_021588040.2 mRNA upstream 74673 23163866 ~ 23197363 (-) False arhgap32a
XM_021588043.2 mRNA upstream 74673 23163866 ~ 23197363 (-) False arhgap32a
XM_021588045.2 mRNA upstream 77852 23167045 ~ 23197366 (-) True arhgap32a
XM_021588048.2 mRNA upstream 113321 23202514 ~ 23276496 (-) False igsf9ba
TU2360712 other downstream 280815 22804258 ~ 22808106 (-) False zbtb16b
TU2360713 other downstream 280815 22804258 ~ 22808106 (-) True zbtb16b
TU2360569 other downstream 370815 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other downstream 370815 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other downstream 371901 22712663 ~ 22717020 (-) False LOC110507789
TU2361952 other upstream 613970 23703163 ~ 23705965 (-) True G2065425
TU2362713 other upstream 674506 23763699 ~ 23765479 (-) True G2066096
TU2362745 other upstream 718545 23807738 ~ 23808909 (-) True G2066126
TU2362913 other upstream 1046984 24136177 ~ 24181820 (-) True pcp4b
TU2364780 other upstream 2729446 25818639 ~ 25834101 (-) True G2068043

Expression Profile