RNA id: TCONS_00057979


Basic Information

Item Value
RNA id TCONS_00057979
length 2136
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id XLOC_028389
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1010960 ~ 1013095 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctcaaaaggtgctctagcgacagacgctagaggccagcatctttagcctccttgttagagcaaccgactctaaTACAAGGAATCAACAGTTCGATCTCAGCTCAGACCAGGTGGGTGCAGTAGGAtcggtgggttacatgtgggggctcgtctgggatgggagtgaggtttagaggtGTGAGTGTGACAGGCCAGCTAGCGaaatgctatgcaggtaaacttcACTGCTCTGACCTCTGTAACCGGTGGGTTACACAATAACTATAGTTATTAATAtattgtggtgattttatagttgctatggtaacgcaacaactagtaatataaacaaacaacccaatactgtagttttccacAACTAGAATATATACTCCAACACACCACTGTTCACAGTAGTAAAATTGAAGGTATACTACAGCATTtattatcagttcactatagttaatgctgcagtatgctggagcattcattaaGAGTTGTagatactataatatatacagtataatacactctACTGTAGTGGCCTATGGTacaaaaacactgcagtgttgtGTAATGTTTCAATAGCGCCATCTGCAGGCCACAAATATGATAACAGCTAAAGTATTGATCTATAAAATACGATTATTACATACACAACTATGACAAAATATAGGGGACATGACTGACCACTGAATAATTCTGCGTTTTTCTGGATGTGCTATATCTATTTTTGAGTAAAATTTGTTAAttgtatgtttgtaaatgtatgtttttcttttttaaaggtcTGAAAACGTGTAttattaatttcaaataaataacattGTCAGTTAAATATAGTTTCTTTTCCCAGAGAATTGCAATCAGGGTTATCGcaccaaataaaatgaaatattgagTTCTTAACTGTTTTGGAGTTAAAACATCAGTAGCTTGCTGTTTAAAGATGAATATAAACGTCTATAAAGTTACATGATTTGGTCATTTTGACTAATGGTCTTTATAATGTAACGTATTTAACAGCATTTTATATATTTGGGAAAAATCAATAATACTTATCAATATAACTACAGAATATCTGAAAGCTTGCTCTTTACTTACCGTAACAGTATAAAATGAACTTGACAGTCATGAGGGTTTgcatattagtttatttattagtatGTGTTTATCTGAGTTTATTATTGTTTCATCTGGTGGGCGAGTAATATTTTGATCAGGCACGTTTGGGGCTCCACATTCAGGGGTCCTCATATCGAAAAGTATCAACCGCCGTCATTTACAGTTTAAACTTATGAATATTAGAACAAACACATGAGGTAAGCTCGATATTTGATATTAAACACATCTGTTTTTACATGAGTTGCAGAAAAGTATTCTGTTTAAGTCATTTCTGCTGTTCACGCGACAAGCGTGCTCATGCTTAATTTACGAGCGGACTTACGGGAGCTAACGGCTAAAGCTAATCCAAACACTCGGTTAAAACATCAAATCGCTACGGTAAAATGGTTAGAATTGGGCTTTAAATGAGCTGCTTATCAGCAAGTGACTTTCTATTGAGATGTCAGAGGCAGGTAAtgtaaatattgtttgtttttgtgggtTTTATTATGCAGCTGTtgctgtttgttttcatgtcGTGGGTTggtctgtttgtttgttgataGGCGTTATTATATCACACACTGCGCACGGCATCCGCAGCTGAGATCAAGAGGTGCATGAGTTCATTTCTATGAATTTTGCACTCTGAAAGAACTGAAATCCTGGATGTGAGCCGTTGATGTTTCTGATATACCCTCAAGGTATTCAGTTCTGCTCATGAAAATGCATCTTCATGAGGAGTTTAGTGTTCGTGCGTCATTATCTGATCTCACTCACACCTAAAGCCTGATATTGAGGTACAGTTGGTTATACGTTACCACATTTAGACTTTCTCAACATAATTTCAGAAAAtgctaaatagggaaatcatattagtagACAATGTACATTGTTCCCAGTCAATAtgcaagtcatacttgcatgttatttttgACCCAATTTTCAAAGTAGTGTGGTAAACCTTATACAGatcatgtcacaagttgtcactgttcaaaaataaacaaatgtgcgaatattaaAACAGCTCAATCCTGATGTTGaagtaaa

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0010430 fatty acid omega-oxidation biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057978 lncRNA downstream 89199 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057977 lncRNA downstream 106938 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057976 lncRNA downstream 106972 899962 ~ 903988 (-) False XLOC_028383
TCONS_00055118 lncRNA downstream 238568 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 241140 764396 ~ 769820 (-) False XLOC_028378
TCONS_00057307 lncRNA upstream 9221 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00057980 lncRNA upstream 15741 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057981 lncRNA upstream 41566 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057982 lncRNA upstream 59172 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA upstream 210069 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00055134 mRNA downstream 18812 985960 ~ 992148 (-) True XLOC_028388
TCONS_00055133 mRNA downstream 19917 982028 ~ 991043 (-) False XLOC_028388
TCONS_00055132 mRNA downstream 45693 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055130 mRNA downstream 62184 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055129 mRNA downstream 102139 905483 ~ 908821 (-) True XLOC_028384
TCONS_00055135 mRNA upstream 1453 1014548 ~ 1015896 (-) True XLOC_028390
TCONS_00055136 mRNA upstream 41613 1054708 ~ 1068155 (-) False XLOC_028393
TCONS_00055137 mRNA upstream 90063 1103158 ~ 1147655 (-) True XLOC_028393
TCONS_00055138 mRNA upstream 288341 1301436 ~ 1360495 (-) False XLOC_028395
TCONS_00055139 mRNA upstream 290242 1303337 ~ 1324141 (-) True XLOC_028395
TCONS_00055131 other downstream 62118 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 202507 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 325541 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 1047429 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1662011 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3479471 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3533114 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3917316 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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