RNA id: TCONS_00057980


Basic Information

Item Value
RNA id TCONS_00057980
length 1582
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id XLOC_028392
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1028836 ~ 1036046 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACCTTTAAAAGACCTCTATGATTTGCATCATCTCTTCGTATGTGTTGTCCTTGAGGTcctcgatggttggcatcatctcttcacaggtcttggatcacatcacatcaattaaatctaaaatgggatgctgtgtagtttatgaaatgaATACAATCCTGCTAGATTCGACATCACGCTGCTTTGCTTATTGCAATAATCAAGGCAACCTCGTTATATCTGCTGTTCTGTATTATTTAGGAAAAGATTAACAGAAATGTCTTCTTCCAGGAGCCCTGCCCAAGGTGACTGGACCGAAAAGTTTCATATTTAGCATAATATAAGGATATTatgacataaaaaaacacaaaacaaaaacaacataccTGAAACACAGGGAAACAGAATAGATAGTTGATTGACGTCacatattattgtaataatacatTCTATTACATAGTAATGTATGTCTTAAATGTCACAAAGAATGCATCTGTCAAATTTCAGCTCAATTCTTCATAGGTTATTTGTCATGCTGTATGTGCATTTCAATTTTGAGGagatgcaaaaaatgcttttttgtgtgtctctttaaatgcaaatgagctccaCTGCCCCTCCCCCTTTACAGAAGTGGGTGGAGCCTTTACAGCTTGTGCTTTGGTTACTCTGACCAAAACAACTACATTTGTTATACTCAGAAAATCTGGCAAACACAAATTCACATATTGGTTAtgcttccatccaaagatgcaaattagacTGGTataaactggaatattgcataaaacctttgcgaataaagcagacagatgctcaagattATTATCTGGaggtaatgataataatactgaaTATGCTAATAATGAAACTGTGTGCACATATTGAttttattaagcatttattttatgcacttttccaaaatgcacacaaaaataGGTGTACAGAGACAGCCAATGATGATTGTGTGAATGTTCTGTGAAACTCACTAAATGAAGCTGGGAGTGTAAATAAGGGGTTCATTTATAGCATATAAAAGAATTTATGCGAGAACTTTagcagaagtaaaataattggATTTTCAGCAGCTGTTGATGAAATGAAATGCTCTAAAAACCTCACTGAATGAGGGACTTGAGCCACAAAACTTCAGGAGCTCCACTTGAATAACCGCGGGCTTCACTTCATAAACCTGTCTAGATTTTCTTCTTCAGATCCGTCAAGAGCCTGTCTGATGATGGAGCGCCGTCAGACGCATTTCTACAGTTTCAGAGGGTCAAAGCTGCTCATTTGCTTCAGTGATGAGAAACGCAGACTGTCCTTTTGTGACTGAAGGCGCTTTCATATTTCCGGGGGCTCAAGAAGACCTTCGGTAGAGCTCAAACGCCAGAGATAAATTACAGGTCAGAGCCGCCCCGTCTGACAGCCGCGCGCTTCATTAAACGCCACCAGCGGGAGTCTGAGAGACGCCGGCAGCACTGCACACACGCCACAGCTTGTTTTAGTGCTGTGATTCAGGATCAGTAAACTGAGACTGTGGGAAAAACCgcagaccatcatcatcatcatcatcaccacgaGTGACCCAGTGTCTGTCTGTCCTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057307 lncRNA downstream 5136 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00057979 lncRNA downstream 15741 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057978 lncRNA downstream 107075 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057977 lncRNA downstream 124814 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057976 lncRNA downstream 124848 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057981 lncRNA upstream 18615 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057982 lncRNA upstream 36221 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA upstream 187118 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00055154 lncRNA upstream 795692 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057984 lncRNA upstream 812614 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00055135 mRNA downstream 12940 1014548 ~ 1015896 (-) True XLOC_028390
TCONS_00055134 mRNA downstream 36688 985960 ~ 992148 (-) True XLOC_028388
TCONS_00055133 mRNA downstream 37793 982028 ~ 991043 (-) False XLOC_028388
TCONS_00055132 mRNA downstream 63569 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055130 mRNA downstream 80060 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055136 mRNA upstream 18662 1054708 ~ 1068155 (-) False XLOC_028393
TCONS_00055137 mRNA upstream 67112 1103158 ~ 1147655 (-) True XLOC_028393
TCONS_00055138 mRNA upstream 265390 1301436 ~ 1360495 (-) False XLOC_028395
TCONS_00055139 mRNA upstream 267291 1303337 ~ 1324141 (-) True XLOC_028395
TCONS_00055140 mRNA upstream 352919 1388965 ~ 1403077 (-) True XLOC_028396
TCONS_00055131 other downstream 79994 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 220383 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 343417 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 1024478 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1639060 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3456520 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3510163 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3894365 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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