RNA id: TCONS_00057981


Basic Information

Item Value
RNA id TCONS_00057981
length 1475
lncRNA type sense_over
GC content 0.42
exon number 4
gene id XLOC_028393
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1054661 ~ 1259741 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGACGTGGATAAAAGCTAAAGCACAGGGCGGCGTTCGCTGACCTGACATCAGAGTCTGAAGACTGACACACATCGCTCGTGATGAAAGCGGCGCGTAATGAAGCTGTCAGACCAAATCCCGAATCTCAGAGCCACAAATCCCCGGcggacacagagctggacacgacAGCACTGATGGATGATGGGAGAAAACATGGCCTGACAACAGGAGGTCAGCGGCTCCATCTGATCAGCTGTGGTGAGAGGATTGATTCAattcacacacagaaacacacacacacacacacacacacacacacacacctctctgtATCTGCCCGCTGGCTGCATCAGATCCTCTAGGTTTCCTTTTGTTTGTTCTcctccatttttttattttattttaggggaGGTGCTTAATTTCCCCTCTAGTTTATAAGAGTCAGTCATTGGCTGATGGACCTGTCACTCATGCCTACGGACCAATGGGAACGCCTGTCTAACACCACTAACAAAAAACATGGACTTTAGAGTTCAGACTACAGCGCAGATTCTGTGAGCGAgtgtatgatgatgatgatgatgtgtgtgtgttgtttttcagactgtTAAAGGTGCAAATGCAATTAGAcgtcggaaaaaaaaaaaaagaaactctagCTGATGAATTTCCCTACACTCCGCTTCCCTCCTCCAGCGCTCCGACATTACCGTCACATTGTAGATGCtcaaagaacaaatattagactTCAGACGCTCGAGTCGTTCTGCTGACGCACACACTCGCTTCTCCGCCCCTTTGAATTTGTGTTGTTgtggcaaaaataaatgaattgtcaGCTGCTGTGCGCTTGTAGAGTGTTAAACAGGTGTGCTCGGACGGGGGGGACGCCagttctctctctccttctctctctctctctctctctctcttgctcaattcaattcaaacttGTTTAATTGGCATTATAAATGTTACAAATGCATTTCTAAAGCATTTctaatgtttacattaaataaaagcaaattgcATAGCAGTAGTGACAGCTTAATAATAAACAATGCATTAATAGTAAGCAGTTGGTTCTCTCAAAAACAGCTTTCTCCTACTCAATTCTATTCAAACTTGCTTAATTGGCATGACAGATGCTTGTTTCAAAgcatttgtaatgtttaaaataaatagtacCTATGAAAACTAATGACAAAACAGTAGTGATgaagaaataataatgaaaatacagtaataataaacaGTTGgatccccccctctctctctctctctctctctctctctctctctgcatgaTGGTGTTTAAGCTTTTCAGTTCAGTCGATTTGCTCCGACCTGCAGATGAACATTTTAAACATCCATATCCGGCATTGTTGTGGAAATAATAAGTCCGTTTGAAaacaacaaatcaaataaaacagtttCAAATTGTGCATTTCTGATGGCTGATTTTGTCACGTGTTGATTAAACCGAGATGCA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0000910 cytokinesis biological_process
GO:0051301 cell division biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057980 lncRNA downstream 18615 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057307 lncRNA downstream 30961 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00057979 lncRNA downstream 41566 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057978 lncRNA downstream 132900 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057977 lncRNA downstream 150639 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057983 lncRNA upstream 118388 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00055154 lncRNA upstream 726962 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057984 lncRNA upstream 743884 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00057308 lncRNA upstream 811010 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057985 lncRNA upstream 811499 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00055135 mRNA downstream 38765 1014548 ~ 1015896 (-) True XLOC_028390
TCONS_00055134 mRNA downstream 62513 985960 ~ 992148 (-) True XLOC_028388
TCONS_00055133 mRNA downstream 63618 982028 ~ 991043 (-) False XLOC_028388
TCONS_00055132 mRNA downstream 89394 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055130 mRNA downstream 105885 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055138 mRNA upstream 196660 1301436 ~ 1360495 (-) False XLOC_028395
TCONS_00055139 mRNA upstream 198561 1303337 ~ 1324141 (-) True XLOC_028395
TCONS_00055140 mRNA upstream 284189 1388965 ~ 1403077 (-) True XLOC_028396
TCONS_00055141 mRNA upstream 364330 1469106 ~ 1497384 (-) True XLOC_028397
TCONS_00055142 mRNA upstream 542322 1647098 ~ 1684335 (-) False XLOC_028398
TCONS_00055131 other downstream 105819 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 246208 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 369242 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 955748 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1570330 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3387790 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3441433 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3825635 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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