RNA id: TCONS_00055139


Basic Information

Item Value
RNA id TCONS_00055139
length 480
RNA type mRNA
GC content 0.52
exon number 4
gene id XLOC_028395
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1301436 ~ 1360495 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCATGCAGCAGCAGTGGGTGTGTGTGgctttattagccctcctgactGTCACAGCGACACTTGCAGATGGTgggaaaacagaaaaacaagGTAAGAAAGAGCGTAAATCGGACTGTGGAGAGTGgcagtggagtgtgtgtgtggccaATGAGGGCGACTGCGGATTGGGAACCAGAGAGGGCACACGCTCCGGCAATGACtgcaaacagaccatcaaaaccCAGCGCTGCAAAATCCCATGCAACTGGAAGAAGCAGTTTGGAGGTGAGTGTAAGTATGATTTCCAGGCATGGGGAGAGTGTGATTCGACCACAGGAATGAAGACTCGCACTGGAGTGCTAAAGCGAGCGCTGATGGATGCTAACTGTCCAAACACAGTCAGCGCCACCAAACCCTGTGGCAAACCCAAGACCAAGATGCAAGACTCTCAGAAACCAAAACGGGACGGAAAGAAGAAGGAGCGAAACCCTACAGACTAG

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
ko00536 Glycosaminoglycan binding proteins

ZFIN:

id description
ZDB-GENE-030624-1 Enables growth factor activity. Acts upstream of or within nervous system development. Predicted to be located in extracellular region. Is expressed in central nervous system and pharyngeal arch. Human ortholog(s) of this gene implicated in adrenal carcinoma. Orthologous to human PTN (pleiotrophin).

Ensembl:

ensembl_id ENSDART00000180720

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057982 lncRNA downstream 43596 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 69101 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057981 lncRNA downstream 198561 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057980 lncRNA downstream 267291 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057307 lncRNA downstream 279637 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055154 lncRNA upstream 507597 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057984 lncRNA upstream 524519 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00057308 lncRNA upstream 591645 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057985 lncRNA upstream 592134 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057986 lncRNA upstream 617892 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00055137 mRNA downstream 155682 1103158 ~ 1147655 (-) True XLOC_028393
TCONS_00055136 mRNA downstream 235182 1054708 ~ 1068155 (-) False XLOC_028393
TCONS_00055135 mRNA downstream 287441 1014548 ~ 1015896 (-) True XLOC_028390
TCONS_00055134 mRNA downstream 311189 985960 ~ 992148 (-) True XLOC_028388
TCONS_00055133 mRNA downstream 312294 982028 ~ 991043 (-) False XLOC_028388
TCONS_00055140 mRNA upstream 64824 1388965 ~ 1403077 (-) True XLOC_028396
TCONS_00055141 mRNA upstream 144965 1469106 ~ 1497384 (-) True XLOC_028397
TCONS_00055142 mRNA upstream 322957 1647098 ~ 1684335 (-) False XLOC_028398
TCONS_00055143 mRNA upstream 323911 1648052 ~ 1684347 (-) True XLOC_028398
TCONS_00055144 mRNA upstream 365171 1689312 ~ 1720648 (-) True XLOC_028399
TCONS_00055131 other downstream 354495 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 494884 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 617918 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 736383 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1350965 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3168425 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3222068 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3606270 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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