RNA id: TU2366801


Basic Information

Item Value
RNA id TU2366801
length 1773
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G2069879
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 27642656 ~ 27665300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATGGTTGAGAGTTCTCACTTTGGCATTTACGGAGAGAACCAAGTCCTGTTGAGTTGACCACTTGCAGTATTGCCTCACTCTTACTGGTTTCAGGTTGCTCTGGTGTTTTCTCTCCTACAGAGTCAGTTGAATCACATCCATCAGATAAAGAAGATGAACTACGTTCTGATATAGGGGATTCACTCCTACATGGGGAAGGCAAGCTCAGGATTGAAACAGGCAGATCACTGGAGTCAGTATGCTCCAGAAGCACAGCACTGGAGTCAGCTTTTTCCATAAGTTCTTCCCCTTGGACTGGAGCTCCACCCATTCTGAGGAACAATGTCTCCAGCTTTGCCTGAAGTCTCTCGCAGAGTCTACGAGCTGCATGGAAGGGTTTCCGCTTTGTCGTACAGTGTCCCACTTGGGTATCTCTCTGGGTGCTTGTTGGCTGATCTAATTCAGCATACTGCACAATGTCCTTGACATCTTCAACAAAGTTATCAATTATTTTTGATGCCTCAGATTCTACTTTGGTCTGTATGAGCTCAGTGGCCGCAGAATCAAGGATCCTGTCAGATGGGCTAGATGCATTCATCAAGCTTGGAGTGGTACTAAACGAATGAGAAGGTTgaaccataccagagatatcgctcattaaccttctcacaagaatttcactcacagcctttgaggctttggtcttgaacttcacactaaacagagtgccaagattttgcatcattgctttgcaagATGTACATATTATGTTCAGCTCCTCTGGAACAGGAGAGTCTTCAACATCCAGGTGCTCCACTACAAGGTCACTGCCAGATGCCAACATTTTAACTTTCACAGCCACTTCTCGAAAAACCTTAGCCAATTCCGGATCTTCTTTTTCCAATTCACCCACCATCTCTGCGATAACAGTCATCACTTCTTCTGTTGCAGGTGGAATGCATGACTCTAATACAGAGGTAGAGCTCTGGTCCTCTGGGGTGGTGTgatcatcaaaacatttctggaccatgttgaccattTGTTCAGCGGCCTGGGTACCAGAAGAAATAGGGGAGGACCGCCCTGAAATGGCTCTGCTGATGGTCGCAGAGAGGGCAGAGTTAAGCTGTTCGACCACCACCTTGATAAGACCAACAGTCAGCTCAGGTGGGCAAGAGGACAGGATATTATGATCAgacagttgctcctggacacttttgatgattctgtcctctgtcattcccaggaggactttcactgaggtctgggaactttaaaaCGAACAAGCAAAGCATGATAATTCCTGTCTTAACTTGGCAAATCGGTCAAGCGTTGTAATTTTAGTATTCTAAATATCTACATGTCCTTTTGATCGCTTTACATGCTCATTCATTTGAATATGCTCAAAGGCTGATACATTACATTTTGTACTACATCAGATAGAGTAAATTGCATTGGCTAACACTGGGATAGATGATCTCGGTGAAATCCATACATGAAAACCTTGAGGGGAACATACCTCTTAGAAGAGGGTGTTAGGGACCTGAGATGTTGAGCCCCTGTGCCGCCCTTATACATTTTCTTCGCCAGATATCtaacttcctggatgagctccagTCTTTCCTGATCAAAGGCAGCAAAGGCTCTTGCACTGCCACCCCtcttgggtgagtcagtgtcgTCGTCAGCAAAGTCCTTTACCCCAAGTACGCGGGCCAGGGCtggcagcaggatctgcagggtggtctgtgcgatgaaggttacaattgtcttgcacaatttggcaagctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2366603 lncRNA downstream 190037 27448220 ~ 27452619 (-) True LOC110507887
TU2366608 lncRNA downstream 247662 27394424 ~ 27394994 (-) True G2069731
TU2366530 lncRNA downstream 308122 27333203 ~ 27334534 (-) False LOC110507885
TU2366555 lncRNA downstream 309625 27287692 ~ 27333031 (-) True G2069679
TU2366548 lncRNA downstream 359540 27282799 ~ 27283116 (-) True G2069672
TU2366816 lncRNA upstream 4822 27670122 ~ 27670402 (-) True G2069894
TU2366832 lncRNA upstream 5543 27670843 ~ 27671082 (-) True G2069910
TU2366835 lncRNA upstream 9371 27674671 ~ 27674917 (-) True G2069913
TU2366838 lncRNA upstream 18530 27683830 ~ 27686291 (-) True G2069916
TU2366839 lncRNA upstream 21350 27686650 ~ 27686929 (-) True G2069917
XM_021588289.2 mRNA downstream 108420 27517351 ~ 27534236 (-) False LOC110507889
XM_036964653.1 mRNA upstream 37354 27702654 ~ 27738528 (-) False LOC118944649
XR_005039998.1 mRNA upstream 85485 27750785 ~ 27751274 (-) True LOC118944710
XM_036965077.1 mRNA upstream 94402 27759702 ~ 27763325 (-) False LOC118944701
XM_036965076.1 mRNA upstream 94402 27759702 ~ 27763326 (-) True LOC118944701
XM_036965088.1 mRNA upstream 108051 27773351 ~ 27774663 (-) True LOC118944708
TU2366760 other downstream 102047 27540000 ~ 27540609 (-) True G2069842
TU2366602 other downstream 182008 27448220 ~ 27460648 (-) False LOC110507887
TU2366604 other downstream 195158 27434255 ~ 27447498 (-) True LOC110507886
TU2366607 other downstream 209526 27430172 ~ 27433130 (-) False LOC110507886
TU2366532 other downstream 238278 27349973 ~ 27404378 (-) True LOC110507885
TU2367315 other upstream 203924 27869224 ~ 27870095 (-) True LOC118944698
TU2367316 other upstream 207409 27872709 ~ 27889358 (-) True LOC118944653
TU2367516 other upstream 505538 28170838 ~ 28172542 (-) True G2070530
TU2367763 other upstream 858646 28523946 ~ 28524550 (-) True G2070744
TU2368344 other upstream 1276054 28941354 ~ 28942728 (-) False G2071247

Expression Profile