RNA id: TCONS_00055155


Basic Information

Item Value
RNA id TCONS_00055155
length 4205
RNA type mRNA
GC content 0.44
exon number 18
gene id XLOC_028407
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1878573 ~ 1914228 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGATTTCAATGGGAACCAGGACTTTCTGTTTTTCAATGATGGAAAGCGAAGGATCGACTTTGTTTTGGTGTATGAATATGAAGAGTCTAAAAATGGATCCAACAAAAAAGCCTCAGTTATAAGAAGAAAAAAAAGGCGAAGAGAGTTTTTCGAAGGAAGCCTGATGAATAAGGGATTGCATCTGGAAATGACACAATCCGTAGTGGATGAGAAGCTTTTCTTTGTGAAATTGCACATGCCGTTCGATGTTCTGTGTGCAAATGCTGAAGTCCTGCATATTAAACTGCCCATCAAATGCAATGACCTCCGTACACAATCCTCCAAGCACAACTGCTGCACTAAACCATTCTACCCTAATGAGGACGTGATTGGCAAAGAGCCGGACTACTTCACGGCGCCCTTCAGGAAAGATCTGCTCAACCGTTTTCAGCTAAAGGAAAGAGAGGGCAGGGAGTTATTTACACCGACCATGAGGAGCAGAATGGTGTATTATATCCTCAGCCGAGCAGAGTATGATATAAAAGGAGAAAATAAGAAGTTTGGGATCACAAAGCTGCTTGCTGGAGGCATCTATAAGGCTGCGTATCCATTACATGACTGCAGGTTTAATGTGAAGTCTAAAGAGGAGGACTGTCCCAATGAGCGTTATCTGCTGTACAGTGAGTGGGCGCATCCTAAAAACTTCTACAAGATGCAGCCGCTGGACCTGATCAGGAAGTATTTCGGTGAGAAAATCGGCATTTATTTCGCCTGGTTGGGTTTCTACACGTTCATGTTGAGCCTCGCTGCTGCGTTCGGACTCGGCTGTTTCATATACGGGTACAGAAGCAGAGAGAGCAGCACATGGAGCAAAGAGGTGTGTGACCCTGATATTGGTGGACAGATTGTCATGTGCCCGCAGTGTGATAATAACTGTCCGTATTGGCGACTCAACACCACGTGCGAGTCCTCGAAAAGGCTGTGTGTGTTTGATAACTTTGGGACTTTAGTGTTTGCTGTCTTCATGTCTGTTTGGGTGACTCTGTTCTTGGAGTTCTGGAAACGTTACCAGGCCAAACTGGAGTACAAGTGGGACACAGTGGAGTTTCAGCAGCAGGAGGAGCAGCCCAGGCCTGAATATGAGGCTAGATGCACCTATGAACGATTTAGTCCTATCACACAGTCCAATGAGAAGGTGCCGTATACAGCCTGTGGAAAGTGCATGAGAGTGTCGTGTGGCATTGGCACTGTGCTTTTCTGGATTCTGTTGATCGTAGCGTCAGTGGTCGGGGTGATTGTGTATCGTTTGGCGATGTTTATGGTGTTCTCGATGCAGCTGCGCTCTGACCTCAATAGAAAAGAGCTGGAGCCGTTCAGAGAGTACATCACGCCTCAGATGGCCACATCCATCACCGCCTCCATCATCaacgtcatcatcatcatgatcctCAATATTGTCTACGAGAAAGTGGCCGTCTGGATCACAGACTTCGAGCTGCCACGGACAAAAACAGAGTATGAGAACAGCCTGACGCTCAAGATGTTCCTCTTTCAGTTCGTCAATTTTTACTCGTCTTGTTTCTACATCGCCTTCTTCAAAGGGAAGATTGTTGGTTATCCAGGAGAACCCGTCTACTGGTTAGGAAAGTTTCGCAATGAGGAGTGTGATCCTGGTGGCTGTCTGACTGAACTGACCACTCAGCTGTCAATCATTATGACTGGAAAGGCCGTCTGGAACAACATACAGGAAGTCCTGCTGCCGTGGCTGAAGAATCTGATGTTTCGTCATTGCACCCAGGTGGGATCAGAAAAAGCGATTCCTCGCTGGGAACAAGACTATCAGCTCCAGCCGATGGGAACACTCGGCCTGTTTTATGAATATCTGGAGATGGTGATCCAGTTTGGCTTTGTGACTCTGTTTGTGGCGTCTTTCCCGCTGGCTCCTCTTCTGGCGCTGGTCAATAACCTGTTTGAGATCCGTGTGGACGCCTGGAAGTTCACCACTCAGTTTCGTAGGATTGTCCCAGAGAAAGCTCAGGACATCGGAGCCTGGCAGCCCATCCTGCAGGGGGTGACCATTCTGGCGGTGGTCACTAATacTGCTATCATCGCCTTCACTTCTGACATGATCCCTCGTCTGGTTTATTATTGGGCTTTTTCTGTCAGTCCTTACGTAGAGAACTCAAACCACACTATGGCCGGCTTCATCGACAGCTCTCTGTCTGTTTTCAACATTAGTCACTTTGACGATAAAACCAGACCTCGAGACGACATCAAACCGATCTGGTTTAACAACATCACCACGTGCCGGTATCGAGATTACAGGAATCCCCCTGATCATCAGAACCCATATCAGTTCAATGTTTATTACTGGCATGTCATCGCCGCCAAACTGGCTTTCATGATCGTGGTGGAGCACATTGTGTATTTCACCAAGTTCATGCTGTCCTACTTGATCCCGGATGTTCCCGAAGCTCTGAACGAGCAGATCAAACGTGAGCGATTCCTGACGCGGGACATCCTAAACAACAGCCAGTTGACAGACCTGATAAAACCCATCCGAGAGAAACTGCAGACGGACGTGGCAGACTTCACTGAGCTGGAGGAGCTGTTATAACGACACAGTGATGTAACGCACAACTCAATCCCAACACTGCATACACCGTGGGAAATGTCTCTCAATGCACAGCTGCCTTATTcagtgattcacaagtgttttctgtttgtttatttaagttgtgaattgcattatgggatgttgatctctgctctgtccacttttgatgtcgaaaattcaactctgcagtttaacaaagtgacttttagtgacattttattagtttaaaataatatatagagataaataaggctgtaaaataagATAAAGTGGTGCAAGGTGTTACATAGCGTAATACACAAcacaaacccagacaatatatcactgcaaactattaaaaatgcagtttttacaggTTTTAAGGTTAACATTTTTTGGAAGAatgatcaagatcccataatgcaagtcaaataacaaaatatgaccgtgacggtgactcagtggttagcactgtggcctcccagcaagaaggtcacagtttcgagtcctggcttggtcagttagtatttctgtgtggagtttgcatgttttccctgtgttggcgtgggtttcccccacagtccaaacacatgcgctaaaggggaaccgatgaactaaattggacgtagtgtgtgtgtatgtgtatgggtgtttcccagtgctgggttgcagctagaagggcatccgctgtgtaaaacacatgctggaatagttggcggttcattccgctgtggcaacccctgataaaataggcgacccctgataaaaagggactaaaccaaaggaaaatgaatgagtgaatctttcattgcagccaaactaaaagaaacaccTGTATAATTCTTACAGACTTTTTaagaaagactttctccagaagacaatattagaaacatttctttgctctgttaaacatgacttggaaataagtgaagtttcacaaactaatttcgagaggagcacgaagctggtctctcatctataATTATTAGTTAACCCATCAGATTAATCCAAATtcactataagtagcctggctaaagctgtggtcacactgcacttttctccccatagacttccattcatacgcactcAAATGTGTCAGACCGAAAACGCaggctcgtgcgacaagttttgcagtttgctgcatgtgtgagaccaatcaaggatcaaaacatgacctctctgaacagaaatgtagatatggaccaattgctcgcttgtttaaatgtctaatcatcttgtttaaatgtctaatcaccttttcgcagcgccgtacgcaGTGTAAGGGAGTAACTAGTTGCACGTACGTAATTACGTTACgtgatttaattacaaaataaaagttacagTAATTcgttacagttactgagaaaaatgtgcaattaaattacagttacttgtaaaaatgttaaagattacacatggggttacatctaaaaatgttcttaaaaatctGGGATATGTTGAATAGTATTAATCTGCTgatttgcctgtttttgatatgcacgatgCCTTCTGCTAAGGTCATTTATTAAGGTGGTGCAattctgatgcttttgatttgcgGCGCACCAACGGTCATAAATCCCGGGGGGGGAACATGTCCTCGGtataaatgcttaaaaataatt

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0034767 positive regulation of ion transmembrane transport biological_process
GO:0030501 positive regulation of bone mineralization biological_process
GO:0007596 blood coagulation biological_process
GO:0055085 transmembrane transport biological_process
GO:0002407 dendritic cell chemotaxis biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0061588 calcium activated phospholipid scrambling biological_process
GO:0061589 calcium activated phosphatidylserine scrambling biological_process
GO:0061590 calcium activated phosphatidylcholine scrambling biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005254 chloride channel activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-081104-64 Predicted to enable chloride channel activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Scott syndrome; ankylosing spondylitis; and inflammatory bowel disease. Orthologous to human ANO6 (anoctamin 6).

Ensembl:

ensembl_id ENSDART00000139586

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057984 lncRNA downstream 22802 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00055154 lncRNA downstream 39409 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057982 lncRNA downstream 618832 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 644337 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057981 lncRNA downstream 773797 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057308 lncRNA upstream 7607 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057985 lncRNA upstream 8096 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057986 lncRNA upstream 33854 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00057987 lncRNA upstream 65968 1974147 ~ 1975064 (-) True XLOC_028408
TCONS_00055164 lncRNA upstream 137227 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00055152 mRNA downstream 39221 1825839 ~ 1839352 (-) False XLOC_028405
TCONS_00055153 mRNA downstream 39381 1827012 ~ 1839192 (-) False XLOC_028405
TCONS_00055151 mRNA downstream 53737 1821637 ~ 1824836 (-) True XLOC_028404
TCONS_00055150 mRNA downstream 60258 1809562 ~ 1818315 (-) True XLOC_028403
TCONS_00055149 mRNA downstream 76954 1801199 ~ 1801619 (-) True XLOC_028402
TCONS_00055157 mRNA upstream 12832 1921011 ~ 1930024 (-) True XLOC_028409
TCONS_00055158 mRNA upstream 80281 1988460 ~ 2036620 (-) False XLOC_028410
TCONS_00055159 mRNA upstream 81310 1989489 ~ 2014406 (-) True XLOC_028410
TCONS_00055160 mRNA upstream 132888 2041067 ~ 2059233 (-) False XLOC_028411
TCONS_00055161 mRNA upstream 136953 2045132 ~ 2052687 (-) False XLOC_028411
TCONS_00055131 other downstream 929731 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1070120 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1193154 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 152345 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 766927 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2584387 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2638030 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3022232 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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