RNA id: TU2367516


Basic Information

Item Value
RNA id TU2367516
length 1471
RNA type TUCP
GC content 0.46
exon number 2
gene id G2070530
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 28170838 ~ 28172542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGCCGTCTCGGCAGGGCTTGGTGTGGTGTTGGCGTATAGGAGGAAATGCCATGACTGCGTTCCATTCTGAGAAAGAACCCCGTTTCTTTAAATCCTAATAGAGCCTCGTCTCATTTAATTGGCACACTTCATGCCTGAGCCTGATAGTAATCTGTTCTCTCCTTCAGGGAGCTGCGAGACAGACGATTCCAGCCAATGCTATCTGACAGGAAGAGACTCACTGCGGAAGCCGGATAAGTTGAGCTCATCCAAAACTCTGGCAGATCCCTTTGACAAAATCTTCAAAATGTGGGCAATCTCAGAGCAGAGAATGGTTTACCTTGTGTGCTTCAAACAGCTGTCCTCCTTCCTTCCCAATCCCTGCACCACCACCTCTTCCTTCACTCCACATTCCCCACCAATCACCAAAGATTCTCACCTGCTATCTATATGAGATTTAGTCAAGTGAGTGGGTGCCAGTAATCTATTCAATTACACTCAATcttctttaaacagcttgggtaTTTGAGTAGAACAGAGGGCCTACAGGTGCTTTATACCAATGACCCAATGACTTAGTTCTGAGGCAATCCCGTCTTACCCTAGGGGAAATGTTCTAGAAGGATTTACTGGGCTAAAGCCTTACATGGATGCCAAACCATATAGTGAGGACTGTGGGACCATGAAACCCACTGACCAGGGGATCTATGGGTTAGTATATCGACATCAAATAACAAGAGTGCATTACTTTTGTGGATAGGTGGTGAATTTGACTATTTGGTGAATGTCATCATTGCTGATAACAAACCACGAGGGACCCAAACCTGATGAAATCCATAATACCTGCAGACCTGCAGTCCAGCCCCCTCACCCGATAAATAACCTCAGAGCTCAGGGACTTTCAGGAGAAAGCCATTAGTCAGGGCTATTTAATTGAAAGGTGAATTATCTGATGaaaagcaccctattccctttgtagtgcactacctttgaccaaagCCACATATGCACTACCCACAGATAGACTCTTAGGGTTTGACATTTAGGAGGACATTGCCCCTAAGAGCTGGGATACAATCGAGGTGGAGTgcccaccctctgaatggcacatagaCTCCGAGAAACTGGTATCGAAAGACCAATCATCTCTATAGGCTGAACCACACTCGTAGGCAAGATAAAGGACCTGAATTAGAATAGAAAACATCGCCAAGAGGCAGCAGTATAACTTCCTATTTCTAAGTGGGCATTTAAAAATCTTCCCCCTTGACTGCAGGAAACACTACCAATACGCAGAGCAAGCAAAGGTCACAGAGAATATGAAATAATTTgtcttgttcgctctctctctctctctggtgaaaAAGCAGGTTCCATTAGCTCTCTCTCTGGTGAAAAAGCAGGTTCCGTTAGCTCTCTCTCTGGTGAAAAAGCAGGTTccgttagctctctctctggtgaaaAAGCAGGTTCCGTTAGCTCTCTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2367487 lncRNA downstream 43035 28126849 ~ 28127803 (-) True G2070501
TU2367426 lncRNA downstream 141947 28028598 ~ 28028891 (-) True G2070444
TU2367423 lncRNA downstream 142258 28027423 ~ 28028580 (-) True G2070443
TU2367421 lncRNA downstream 142356 28027112 ~ 28028482 (-) False G2070443
TU2367416 lncRNA downstream 147350 28021123 ~ 28023488 (-) False G2070442
TU2367574 lncRNA upstream 78394 28250936 ~ 28252003 (-) True G2070584
TU2367582 lncRNA upstream 86523 28259065 ~ 28263874 (-) True G2070592
TU2367641 lncRNA upstream 163191 28335733 ~ 28337938 (-) True G2070646
TU2367647 lncRNA upstream 175614 28348156 ~ 28353011 (-) True G2070652
TU2367659 lncRNA upstream 197251 28369793 ~ 28371687 (-) False G2070664
XM_021588299.2 mRNA downstream 176829 27983086 ~ 27994009 (-) False LOC110507896
XR_005039981.1 mRNA downstream 176829 27983086 ~ 27994009 (-) True LOC110507896
XM_036964938.1 mRNA downstream 184807 27983086 ~ 27986031 (-) False LOC110507896
XM_036964939.1 mRNA downstream 184807 27983086 ~ 27986031 (-) False LOC110507896
XM_021588293.2 mRNA downstream 195622 27972086 ~ 27975216 (-) True LOC110507894
XM_021588314.2 mRNA upstream 313831 28486373 ~ 28491070 (-) False LOC110507901
XR_002471207.2 mRNA upstream 313831 28486373 ~ 28491070 (-) True LOC110507901
XM_021587001.2 mRNA upstream 319043 28491585 ~ 28513616 (-) True LOC110507147
XM_036964616.1 mRNA upstream 390442 28562984 ~ 28655618 (-) True LOC110507903
XM_021588321.2 mRNA upstream 506825 28679367 ~ 28682612 (-) False LOC110507905
TU2367316 other downstream 281480 27872709 ~ 27889358 (-) True LOC118944653
TU2367315 other downstream 300743 27869224 ~ 27870095 (-) True LOC118944698
TU2366760 other downstream 630229 27540000 ~ 27540609 (-) True G2069842
TU2366602 other downstream 710190 27448220 ~ 27460648 (-) False LOC110507887
TU2366604 other downstream 723340 27434255 ~ 27447498 (-) True LOC110507886
TU2367763 other upstream 351404 28523946 ~ 28524550 (-) True G2070744
TU2368344 other upstream 768812 28941354 ~ 28942728 (-) False G2071247
TU2369096 other upstream 1459370 29631912 ~ 29651467 (-) False zgc:165508
TU2369097 other upstream 1459370 29631912 ~ 29650545 (-) False zgc:165508
TU2369099 other upstream 1459452 29631994 ~ 29651467 (-) True zgc:165508

Expression Profile