RNA id: TCONS_00006060


Basic Information

Item Value
RNA id TCONS_00006060
length 736
lncRNA type inter_gene
GC content 0.37
exon number 5
gene id XLOC_002813
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27000562 ~ 27002614 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaaaacaaacattcttataaacagattttttcttacaaaataaattatttgtttgtgGAATACGTGTGTTTTGATGAATCTGTGCTTTACAGATTTATACAGTCTTTCACGCTTAAAAAAGACGCTCCTTTTCGCCACCTACTGGCGTAACAGTGTAGTTTAAACTCCGGTAAAATGAATCATTCAGAGAAAAGATTCGATTCATTGAGATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATCGCTGCGGCCGGACAGCAAACTGCTCTTTGGCAGGTACATTAAGAAAATGGGCAAAACATGAGTCCTAACATTAGTGGAATGGAAGGAGGAACCATCGACCTATGACAATATTGTTTCTAAAAAGAACCTACTGAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTTGCCTATGAGGATGAAAGTTCACCAGCCACAGTTCTAGACATTAAAGAGAACAAAGAAACTCTCAGGAGGAGGATATTCAGAAGAGGGGAATTTACAGACGTAGTACAGAAGAAGTTTCCAAACGTACCAATAAAATTTATCAGAGCAGCAGTAAGGGGAAAAAGTAAATGATGAGCACAAGTTACAAGTAAGgaaaatggaGTAAACGCAGCCTGTTCATTGGATTCTggtctactttttatttttattttttttaacaattttaataaataatttgtga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006059 lncRNA downstream 1066 26991809 ~ 26999496 (-) False XLOC_002812
TCONS_00006058 lncRNA downstream 98257 26901272 ~ 26902305 (-) True XLOC_002809
TCONS_00005206 lncRNA downstream 105486 26892567 ~ 26895076 (-) True XLOC_002808
TCONS_00006057 lncRNA downstream 128149 26836836 ~ 26872413 (-) True XLOC_002807
TCONS_00006056 lncRNA downstream 553391 26441052 ~ 26447171 (-) True XLOC_002802
TCONS_00006063 lncRNA upstream 155323 27157937 ~ 27162145 (-) False XLOC_002816
TCONS_00006062 lncRNA upstream 155323 27157937 ~ 27162145 (-) True XLOC_002816
TCONS_00006064 lncRNA upstream 1195302 28197916 ~ 28202821 (-) False XLOC_002823
TCONS_00006065 lncRNA upstream 1195302 28197916 ~ 28267126 (-) False XLOC_002823
TCONS_00006067 lncRNA upstream 1195302 28197916 ~ 28291300 (-) False XLOC_002823
TCONS_00005210 mRNA downstream 1080 26998414 ~ 26999482 (-) True XLOC_002812
TCONS_00005209 mRNA downstream 3218 26991805 ~ 26997344 (-) False XLOC_002812
TCONS_00005208 mRNA downstream 10687 26987108 ~ 26989875 (-) True XLOC_002811
TCONS_00005207 mRNA downstream 15331 26982254 ~ 26985231 (-) True XLOC_002810
TCONS_00005205 mRNA downstream 207114 26771047 ~ 26793448 (-) True XLOC_002806
TCONS_00005212 mRNA upstream 3652 27006266 ~ 27009584 (-) False XLOC_002814
TCONS_00005213 mRNA upstream 3655 27006269 ~ 27009470 (-) False XLOC_002814
TCONS_00005215 mRNA upstream 3957 27006571 ~ 27009413 (-) True XLOC_002814
TCONS_00005216 mRNA upstream 25405 27028019 ~ 27049170 (-) False XLOC_002815
TCONS_00005217 mRNA upstream 25429 27028043 ~ 27046639 (-) True XLOC_002815
TCONS_00005203 other downstream 256431 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005187 other downstream 798039 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005183 other downstream 859481 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005164 other downstream 1501088 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 2544830 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005214 other upstream 3657 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 167342 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005228 other upstream 411632 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005237 other upstream 1196280 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005238 other upstream 1290229 28292843 ~ 28292959 (-) True XLOC_002825

Expression Profile

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