RNA id: TU2375789


Basic Information

Item Value
RNA id TU2375789
length 664
RNA type TUCP
GC content 0.49
exon number 1
gene id G2077936
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35435594 ~ 35436257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccaggggtggaaagaccttggatcattgttactctaacttccgcgacgcatataaggccctgccccgcccccctttcggaaaagctgaccacgactccattttgttgatccctgcctacagacagaaactaaaacaagaggctcccacgctgaggtctgtccaacgctggtccgaccaagctgactccacactccaagactgcttccatcacgtggactgggacatgtttcgtattgcgtcagacaacaacattgacgaatacgctgattcagtgtgcgagttcattagaacgtgcgttgaagatgtcgttcccatagcaacgattaaaacattccctaaccagaaaccgtggattgatggcagcattcgcgtgaaactgaaagcgcgaaccactgcttttaatcagggcaaggtgtctggtaacatgaccgaatacaaacagtgcagctattccctccgcaaggttatcaaacaagctaagcgtcagtacagagacaaagtagaatctcaattcaacggctcagacacaagaggcatgtggcagggtctacagtcaatcacggactacaggaagaaatccagcccagtcacggaccaggatgtcctgctcccaggcagactaaataacttttttgcccgctttgaggacaatacagtgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2375788 lncRNA downstream 79 35435256 ~ 35435515 (-) True G2077935
TU2375785 lncRNA downstream 2233 35433104 ~ 35433361 (-) True G2077932
TU2375781 lncRNA downstream 5847 35426266 ~ 35429747 (-) True G2077929
TU2375767 lncRNA downstream 35416 35399937 ~ 35400178 (-) True G2077917
TU2375739 lncRNA downstream 82070 35351380 ~ 35353524 (-) True G2077892
TU2375791 lncRNA upstream 1426 35437683 ~ 35536886 (-) False G2077938
TU2375793 lncRNA upstream 1426 35437683 ~ 35536886 (-) False G2077938
TU2375807 lncRNA upstream 9802 35446059 ~ 35447684 (-) True G2077943
TU2375825 lncRNA upstream 46087 35482344 ~ 35483646 (-) True G2077959
TU2375841 lncRNA upstream 85914 35522171 ~ 35522651 (-) True G2077973
XM_036965804.1 mRNA downstream 104977 35248879 ~ 35330617 (-) False LOC110507210
XM_036965799.1 mRNA downstream 104980 35171163 ~ 35330614 (-) False LOC110507210
XR_002471097.2 mRNA upstream 347236 35783493 ~ 35787697 (-) True LOC110507269
XM_021588406.2 mRNA upstream 639886 36076143 ~ 36107044 (-) True LOC110507979
LOC110507212 mRNA upstream 671459 36107716 ~ 36108445 (-) True LOC110507212
XM_036965427.1 mRNA upstream 696480 36132737 ~ 36262873 (-) False LOC110507213
XM_036965426.1 mRNA upstream 696480 36132737 ~ 36264360 (-) False LOC110507213
TU2375787 other downstream 382 35434874 ~ 35435212 (-) True G2077934
TU2375411 other downstream 281551 35116382 ~ 35154043 (-) True G2077617
TU2373899 other downstream 2554706 32878789 ~ 32880888 (-) True G2076236
TU2371806 other downstream 3407627 32027628 ~ 32027967 (-) True G2074300
TU2370034 other downstream 5038914 30395775 ~ 30396680 (-) True G2072732
TU2376010 other upstream 290599 35726856 ~ 35727482 (-) True G2078119
TU2376118 other upstream 390859 35827116 ~ 35827711 (-) True G2078218
TU2376170 other upstream 422645 35858902 ~ 35863277 (-) False G2078260
TU2376169 other upstream 426496 35862753 ~ 35866253 (-) True G2078260
TU2376173 other upstream 437045 35873302 ~ 35876648 (-) False G2078263

Expression Profile