RNA id: TU2375791


Basic Information

Item Value
RNA id TU2375791
length 848
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G2077938
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35437683 ~ 35536886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAAGTaggtgtctgtatgtgtctgtatgtagcctagctacttcaatagcctcgctactgtaaatagcttgtctttttactgttgttttatttctttacttacctattgttcacctaatactttTTTTGAACTATTGCTTAgagcccgtaagtaagcatttcactgtacggtctataatacctgttgtattcagcatttcactgtaaggtctataatacctgttgtattcagcatttcactgtaaggtctataatacctgttgtattcagcatttcactgtacggtctataatacctgttgtattcagcatttcactgtaaggtctataatacctgttgtattcagcatttcactgtacggtctataatacctgttgtattcagcatttcactgtaaggtctataatacctgttgtattcagcatttcactgtaaggtctataatacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattgtgacaaatacaatttgatttgatttgttttgagtCACAGAACTTGCCTGCGTCCACTTCCAAGAACAGATGctcactctttaaaaaaaattgttatcctttctttctctctctacctctcagtctctctgtctgtcttttgctGTCTTGACTCTCCCCATCAATCTCCATATATGTCCTAATcgccaccccccacacacatatatatacaaacagaacacacacacccattccCCAAGGTTTGTACCGGTGCAGAATCGTACCCctgtcagtgtccctcctctcctctccctctctctacctctcctacaCCACTTTTCAATTAGAGAGTGAATGGGTTGGGAAATAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2375788 lncRNA downstream 2168 35435256 ~ 35435515 (-) True G2077935
TU2375785 lncRNA downstream 4322 35433104 ~ 35433361 (-) True G2077932
TU2375781 lncRNA downstream 7936 35426266 ~ 35429747 (-) True G2077929
TU2375767 lncRNA downstream 37505 35399937 ~ 35400178 (-) True G2077917
TU2375739 lncRNA downstream 84159 35351380 ~ 35353524 (-) True G2077892
TU2375912 lncRNA upstream 47909 35584795 ~ 35607641 (-) True G2078040
TU2375946 lncRNA upstream 133780 35670666 ~ 35670897 (-) True G2078073
TU2375956 lncRNA upstream 140398 35677284 ~ 35677596 (-) True G2078083
TU2376011 lncRNA upstream 191754 35728640 ~ 35728951 (-) True G2078120
TU2376015 lncRNA upstream 193618 35730504 ~ 35730722 (-) True G2078124
XM_036965804.1 mRNA downstream 107066 35248879 ~ 35330617 (-) False LOC110507210
XM_036965799.1 mRNA downstream 107069 35171163 ~ 35330614 (-) False LOC110507210
XR_002471097.2 mRNA upstream 246607 35783493 ~ 35787697 (-) True LOC110507269
XM_021588406.2 mRNA upstream 539257 36076143 ~ 36107044 (-) True LOC110507979
LOC110507212 mRNA upstream 570830 36107716 ~ 36108445 (-) True LOC110507212
XM_036965427.1 mRNA upstream 595851 36132737 ~ 36262873 (-) False LOC110507213
XM_036965426.1 mRNA upstream 595851 36132737 ~ 36264360 (-) False LOC110507213
TU2375789 other downstream 1426 35435594 ~ 35436257 (-) True G2077936
TU2375787 other downstream 2471 35434874 ~ 35435212 (-) True G2077934
TU2375411 other downstream 283640 35116382 ~ 35154043 (-) True G2077617
TU2373899 other downstream 2556795 32878789 ~ 32880888 (-) True G2076236
TU2371806 other downstream 3409716 32027628 ~ 32027967 (-) True G2074300
TU2376010 other upstream 189970 35726856 ~ 35727482 (-) True G2078119
TU2376118 other upstream 290230 35827116 ~ 35827711 (-) True G2078218
TU2376170 other upstream 322016 35858902 ~ 35863277 (-) False G2078260
TU2376169 other upstream 325867 35862753 ~ 35866253 (-) True G2078260
TU2376173 other upstream 336416 35873302 ~ 35876648 (-) False G2078263

Expression Profile