RNA id: TU2375825


Basic Information

Item Value
RNA id TU2375825
length 485
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2077959
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35482344 ~ 35483646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgcatatgtattcaccctctttgcatatgtattcactccctttgcatatgtattcaccctcttgcatatgtattcaccccctttacatatgtattcaccccctttgcatatgtattcaccccctttacatatgtattcaccccctttacatatgtattcaccccctttgcatatgtattcacccatttgcatatgtattcactccctttgcatatgtattcaccccctttggatatgtattcaccctctttacatatgtattcaccccctttactatgaagcccctacataagatctggtgcaaccaattaccttcagaagtcacataatttcttaaataaagtccacctgtgcacaatctaagtgtcacatgatctgtcacatgatctcagtatatatatacatctgttctgaaaggccccagagtcttcaacaccactaagcaagggacaccatcaagcaagcggcactatgaagaccaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2375807 lncRNA downstream 34660 35446059 ~ 35447684 (-) True G2077943
TU2375788 lncRNA downstream 46829 35435256 ~ 35435515 (-) True G2077935
TU2375785 lncRNA downstream 48983 35433104 ~ 35433361 (-) True G2077932
TU2375781 lncRNA downstream 52597 35426266 ~ 35429747 (-) True G2077929
TU2375767 lncRNA downstream 82166 35399937 ~ 35400178 (-) True G2077917
TU2375841 lncRNA upstream 38525 35522171 ~ 35522651 (-) True G2077973
TU2375792 lncRNA upstream 52519 35536165 ~ 35536886 (-) True G2077938
TU2375912 lncRNA upstream 101149 35584795 ~ 35607641 (-) True G2078040
TU2375946 lncRNA upstream 187020 35670666 ~ 35670897 (-) True G2078073
TU2375956 lncRNA upstream 193638 35677284 ~ 35677596 (-) True G2078083
XM_036965804.1 mRNA downstream 151727 35248879 ~ 35330617 (-) False LOC110507210
XM_036965799.1 mRNA downstream 151730 35171163 ~ 35330614 (-) False LOC110507210
XR_002471097.2 mRNA upstream 299847 35783493 ~ 35787697 (-) True LOC110507269
XM_021588406.2 mRNA upstream 592497 36076143 ~ 36107044 (-) True LOC110507979
LOC110507212 mRNA upstream 624070 36107716 ~ 36108445 (-) True LOC110507212
XM_036965427.1 mRNA upstream 649091 36132737 ~ 36262873 (-) False LOC110507213
XM_036965426.1 mRNA upstream 649091 36132737 ~ 36264360 (-) False LOC110507213
TU2375789 other downstream 46087 35435594 ~ 35436257 (-) True G2077936
TU2375787 other downstream 47132 35434874 ~ 35435212 (-) True G2077934
TU2375411 other downstream 328301 35116382 ~ 35154043 (-) True G2077617
TU2373899 other downstream 2601456 32878789 ~ 32880888 (-) True G2076236
TU2371806 other downstream 3454377 32027628 ~ 32027967 (-) True G2074300
TU2376010 other upstream 243210 35726856 ~ 35727482 (-) True G2078119
TU2376118 other upstream 343470 35827116 ~ 35827711 (-) True G2078218
TU2376170 other upstream 375256 35858902 ~ 35863277 (-) False G2078260
TU2376169 other upstream 379107 35862753 ~ 35866253 (-) True G2078260
TU2376173 other upstream 389656 35873302 ~ 35876648 (-) False G2078263

Expression Profile