RNA id: TCONS_00058005


Basic Information

Item Value
RNA id TCONS_00058005
length 719
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id XLOC_028443
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4178834 ~ 4229155 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATTATTACGTTATGAGTGAATTACCTTTTGTTAGTAATAAAATACTATgataacaagcagaaaatgttaATTGGCCAATGAGATAACCAAATTGAAATGCTCTATTAAGACTTCTGAAGAGTCGATGCAGTTTTCACAGTGTAAATGTCAGCTGAGCTCATATTTTAGAAGTAGGTAAGACATGTAAACATTACATTGATGACTCATCTTGCACTACCAAATCTGCCCAATCAAATTCGTTCTACATGACATCACTCCCAAAAAGCTCACGTGACTGCTTTAGCACAACAAACGGCCTTTGTTGACTATCAGGTGGAAACTTGACATCAGAAAAAGCCTTTGCAAAGGATATAAATGCGTGTGGATGTGGAGGAGCGTCAGGTGAAAGATGTGCAGCACACAACGGACACACGTGTGCATCTTCACTGCTGCAGACCCGCCCTCACTGTCATTCATctgcagagaaagagagagagcaatgAGTAAACACAAAAACTACAACGACATCACTACAAGCTTACAGCATTACTCTCATACAAACTCTCAAGACTTTATACACAATTAAGCGCTTCTTCACGCCGAAAGTCACTTACAGTGCACATGATTTATGGACCATTGGTTCCAGTTCATCCATTATCTCCAGCTCTACTGGATCAGTGATGTGTTGTGGACTGTAAGCCTGTTGAACAGAAGCAGAGACGTGTGGACAGACACTG

Function

GO:

id name namespace
GO:0042985 negative regulation of amyloid precursor protein biosynthetic process biological_process
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:1903019 negative regulation of glycoprotein metabolic process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0010561 negative regulation of glycoprotein biosynthetic process biological_process
GO:0097060 synaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097447 dendritic tree cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098984 neuron to neuron synapse cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0044309 neuron spine cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0043197 dendritic spine cellular_component
GO:0098794 postsynapse cellular_component
GO:0032279 asymmetric synapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057315 lncRNA downstream 8179 4192402 ~ 4211969 (-) False XLOC_028443
TCONS_00058002 lncRNA downstream 9684 4207590 ~ 4210464 (-) True XLOC_028444
TCONS_00057996 lncRNA downstream 56272 4162825 ~ 4163876 (-) True XLOC_028442
TCONS_00057314 lncRNA downstream 62613 4147628 ~ 4157535 (-) True XLOC_028441
TCONS_00057313 lncRNA downstream 67478 4147628 ~ 4152670 (-) False XLOC_028441
TCONS_00055214 lncRNA upstream 8932 4238000 ~ 4256275 (-) False XLOC_028445
TCONS_00055216 lncRNA upstream 92100 4321168 ~ 4374704 (-) True XLOC_028446
TCONS_00055221 lncRNA upstream 285370 4514438 ~ 4516508 (-) True XLOC_028450
TCONS_00058006 lncRNA upstream 711399 4940467 ~ 4962892 (-) False XLOC_028461
TCONS_00057318 lncRNA upstream 726884 4955952 ~ 4961841 (-) True XLOC_028461
TCONS_00055207 mRNA downstream 90961 4120570 ~ 4129187 (-) True XLOC_028440
TCONS_00055206 mRNA downstream 100723 4117002 ~ 4119425 (-) True XLOC_028439
TCONS_00055205 mRNA downstream 100752 4115778 ~ 4119396 (-) False XLOC_028439
TCONS_00055204 mRNA downstream 409131 3806258 ~ 3811017 (-) True XLOC_028434
TCONS_00055203 mRNA downstream 414156 3792950 ~ 3805992 (-) True XLOC_028433
TCONS_00055209 mRNA upstream 5926 4234994 ~ 4256300 (-) False XLOC_028445
TCONS_00055210 mRNA upstream 6164 4235232 ~ 4250317 (-) False XLOC_028445
TCONS_00055211 mRNA upstream 6194 4235262 ~ 4259079 (-) False XLOC_028445
TCONS_00055212 mRNA upstream 6237 4235305 ~ 4259102 (-) False XLOC_028445
TCONS_00055213 mRNA upstream 6251 4235319 ~ 4256367 (-) False XLOC_028445
TCONS_00055185 other downstream 1534058 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2057424 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 3271306 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 3411695 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 3534729 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055220 other upstream 263498 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 317141 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 701343 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 1140988 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 2207696 6436764 ~ 6451732 (-) False XLOC_028490