Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055208 |
| length | 1222 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 4 |
| gene id | XLOC_028443 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 4178834 ~ 4229155 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042985 | negative regulation of amyloid precursor protein biosynthetic process | biological_process |
| GO:0048172 | regulation of short-term neuronal synaptic plasticity | biological_process |
| GO:0007267 | cell-cell signaling | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0098916 | anterograde trans-synaptic signaling | biological_process |
| GO:0099504 | synaptic vesicle cycle | biological_process |
| GO:0099536 | synaptic signaling | biological_process |
| GO:0099537 | trans-synaptic signaling | biological_process |
| GO:1903019 | negative regulation of glycoprotein metabolic process | biological_process |
| GO:0099003 | vesicle-mediated transport in synapse | biological_process |
| GO:0006836 | neurotransmitter transport | biological_process |
| GO:0010561 | negative regulation of glycoprotein biosynthetic process | biological_process |
| GO:0097060 | synaptic membrane | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0030425 | dendrite | cellular_component |
| GO:0098590 | plasma membrane region | cellular_component |
| GO:0044456 | obsolete synapse part | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0071944 | cell periphery | cellular_component |
| GO:0097447 | dendritic tree | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0098984 | neuron to neuron synapse | cellular_component |
| GO:0036477 | somatodendritic compartment | cellular_component |
| GO:0044309 | neuron spine | cellular_component |
| GO:0014069 | postsynaptic density | cellular_component |
| GO:0043197 | dendritic spine | cellular_component |
| GO:0098794 | postsynapse | cellular_component |
| GO:0032279 | asymmetric synapse | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00057316 | lncRNA | downstream | 740 | 4192402 ~ 4223533 (-) | False | XLOC_028443 |
| TCONS_00057317 | lncRNA | downstream | 740 | 4207997 ~ 4223533 (-) | False | XLOC_028443 |
| TCONS_00057315 | lncRNA | downstream | 12304 | 4192402 ~ 4211969 (-) | False | XLOC_028443 |
| TCONS_00058002 | lncRNA | downstream | 13809 | 4207590 ~ 4210464 (-) | True | XLOC_028444 |
| TCONS_00057996 | lncRNA | downstream | 60397 | 4162825 ~ 4163876 (-) | True | XLOC_028442 |
| TCONS_00055214 | lncRNA | upstream | 8845 | 4238000 ~ 4256275 (-) | False | XLOC_028445 |
| TCONS_00055216 | lncRNA | upstream | 92013 | 4321168 ~ 4374704 (-) | True | XLOC_028446 |
| TCONS_00055221 | lncRNA | upstream | 285283 | 4514438 ~ 4516508 (-) | True | XLOC_028450 |
| TCONS_00058006 | lncRNA | upstream | 711312 | 4940467 ~ 4962892 (-) | False | XLOC_028461 |
| TCONS_00057318 | lncRNA | upstream | 726797 | 4955952 ~ 4961841 (-) | True | XLOC_028461 |
| TCONS_00055207 | mRNA | downstream | 95086 | 4120570 ~ 4129187 (-) | True | XLOC_028440 |
| TCONS_00055206 | mRNA | downstream | 104848 | 4117002 ~ 4119425 (-) | True | XLOC_028439 |
| TCONS_00055205 | mRNA | downstream | 104877 | 4115778 ~ 4119396 (-) | False | XLOC_028439 |
| TCONS_00055204 | mRNA | downstream | 413256 | 3806258 ~ 3811017 (-) | True | XLOC_028434 |
| TCONS_00055203 | mRNA | downstream | 418281 | 3792950 ~ 3805992 (-) | True | XLOC_028433 |
| TCONS_00055209 | mRNA | upstream | 5839 | 4234994 ~ 4256300 (-) | False | XLOC_028445 |
| TCONS_00055210 | mRNA | upstream | 6077 | 4235232 ~ 4250317 (-) | False | XLOC_028445 |
| TCONS_00055211 | mRNA | upstream | 6107 | 4235262 ~ 4259079 (-) | False | XLOC_028445 |
| TCONS_00055212 | mRNA | upstream | 6150 | 4235305 ~ 4259102 (-) | False | XLOC_028445 |
| TCONS_00055213 | mRNA | upstream | 6164 | 4235319 ~ 4256367 (-) | False | XLOC_028445 |
| TCONS_00055185 | other | downstream | 1538183 | 2675106 ~ 2686090 (-) | False | XLOC_028423 |
| TCONS_00055166 | other | downstream | 2061549 | 2060524 ~ 2162724 (-) | False | XLOC_028412 |
| TCONS_00055131 | other | downstream | 3275431 | 937229 ~ 948842 (-) | True | XLOC_028386 |
| TCONS_00055123 | other | downstream | 3415820 | 804147 ~ 808453 (-) | True | XLOC_028380 |
| TCONS_00055111 | other | downstream | 3538854 | 683052 ~ 685419 (-) | True | XLOC_028374 |
| TCONS_00055220 | other | upstream | 263411 | 4492566 ~ 4496791 (-) | True | XLOC_028449 |
| TCONS_00055225 | other | upstream | 317054 | 4546209 ~ 4570805 (-) | True | XLOC_028452 |
| TCONS_00055239 | other | upstream | 701256 | 4930411 ~ 4932524 (-) | True | XLOC_028460 |
| TCONS_00055263 | other | upstream | 1140901 | 5370056 ~ 5371622 (-) | True | XLOC_028470 |
| TCONS_00055293 | other | upstream | 2207609 | 6436764 ~ 6451732 (-) | False | XLOC_028490 |
