Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055214 |
| length | 786 |
| lncRNA type | retained_intron |
| GC content | 0.49 |
| exon number | 6 |
| gene id | XLOC_028445 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 4234994 ~ 4261673 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048916 | posterior lateral line development | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040426-2768 | Acts upstream of or within posterior lateral line development. Predicted to be located in extracellular region and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including EVL; epidermis; periderm; pronephric duct; and sensory system. Human ortholog(s) of this gene implicated in prostate adenocarcinoma. Orthologous to human CD9 (CD9 molecule). |
| ensembl_id | ENSDART00000147804 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00055208 | lncRNA | downstream | 8845 | 4224273 ~ 4229155 (-) | True | XLOC_028443 |
| TCONS_00057997 | lncRNA | downstream | 8932 | 4178834 ~ 4229068 (-) | False | XLOC_028443 |
| TCONS_00057998 | lncRNA | downstream | 8932 | 4183439 ~ 4229068 (-) | False | XLOC_028443 |
| TCONS_00057999 | lncRNA | downstream | 8932 | 4187970 ~ 4229068 (-) | False | XLOC_028443 |
| TCONS_00058000 | lncRNA | downstream | 8932 | 4197618 ~ 4229068 (-) | False | XLOC_028443 |
| TCONS_00055216 | lncRNA | upstream | 64893 | 4321168 ~ 4374704 (-) | True | XLOC_028446 |
| TCONS_00055221 | lncRNA | upstream | 258163 | 4514438 ~ 4516508 (-) | True | XLOC_028450 |
| TCONS_00058006 | lncRNA | upstream | 684192 | 4940467 ~ 4962892 (-) | False | XLOC_028461 |
| TCONS_00057318 | lncRNA | upstream | 699677 | 4955952 ~ 4961841 (-) | True | XLOC_028461 |
| TCONS_00058009 | lncRNA | upstream | 706682 | 4962957 ~ 4966824 (-) | False | XLOC_028462 |
| TCONS_00055207 | mRNA | downstream | 108813 | 4120570 ~ 4129187 (-) | True | XLOC_028440 |
| TCONS_00055206 | mRNA | downstream | 118575 | 4117002 ~ 4119425 (-) | True | XLOC_028439 |
| TCONS_00055205 | mRNA | downstream | 118604 | 4115778 ~ 4119396 (-) | False | XLOC_028439 |
| TCONS_00055204 | mRNA | downstream | 426983 | 3806258 ~ 3811017 (-) | True | XLOC_028434 |
| TCONS_00055203 | mRNA | downstream | 432008 | 3792950 ~ 3805992 (-) | True | XLOC_028433 |
| TCONS_00055217 | mRNA | upstream | 120223 | 4376498 ~ 4387012 (-) | True | XLOC_028447 |
| TCONS_00055218 | mRNA | upstream | 141228 | 4397503 ~ 4431975 (-) | True | XLOC_028448 |
| TCONS_00055219 | mRNA | upstream | 228376 | 4484651 ~ 4507761 (-) | False | XLOC_028449 |
| TCONS_00055222 | mRNA | upstream | 269973 | 4526248 ~ 4535189 (-) | True | XLOC_028451 |
| TCONS_00055223 | mRNA | upstream | 283948 | 4540223 ~ 4592287 (-) | False | XLOC_028452 |
| TCONS_00055185 | other | downstream | 1551910 | 2675106 ~ 2686090 (-) | False | XLOC_028423 |
| TCONS_00055166 | other | downstream | 2075276 | 2060524 ~ 2162724 (-) | False | XLOC_028412 |
| TCONS_00055131 | other | downstream | 3289158 | 937229 ~ 948842 (-) | True | XLOC_028386 |
| TCONS_00055123 | other | downstream | 3429547 | 804147 ~ 808453 (-) | True | XLOC_028380 |
| TCONS_00055111 | other | downstream | 3552581 | 683052 ~ 685419 (-) | True | XLOC_028374 |
| TCONS_00055220 | other | upstream | 236291 | 4492566 ~ 4496791 (-) | True | XLOC_028449 |
| TCONS_00055225 | other | upstream | 289934 | 4546209 ~ 4570805 (-) | True | XLOC_028452 |
| TCONS_00055239 | other | upstream | 674136 | 4930411 ~ 4932524 (-) | True | XLOC_028460 |
| TCONS_00055263 | other | upstream | 1113781 | 5370056 ~ 5371622 (-) | True | XLOC_028470 |
| TCONS_00055293 | other | upstream | 2180489 | 6436764 ~ 6451732 (-) | False | XLOC_028490 |
