RNA id: TCONS_00055215


Basic Information

Item Value
RNA id TCONS_00055215
length 711
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_028445
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4234994 ~ 4261673 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACTTGGGGAATGAAAAGCGCACGACTCTGAACATCACAATAGGCTCCATTCTTCACAACCAAACTGTCATCCTCACTGTATTCGCCTCTGCACAGAGCCGGTGGCACCACCATCTTTAGGAAAAATCAATCAAAGCAAAGAACTGCTATAATTAGACACAGAGGACAGAATCTGTAAACAGAACAGTGTGGAAGCAGCCATGCATGAGTAATGGTTGCATAAGCAGCAGCATTAAGCCACAGCCCGAccagcacacagacacacagcagacCTTTGGGGATTCAAGCATCTGAAAACAACACGATTTCTGCTCTTTATTTGAGTCTGAACACGGATCTATCTACATGATGTCTAAATCAGGTCTGTCCAGTGGAGAGCAATGCATCAAATACATCATATTCTTCTTTAATTTCATGTTATGGCTCGCCGGTACAGGAGTTTTGGCTGTTGGTCTGTGGCTGCGCTTCGATGCTAAAACTAAAGAATTCTTCACTgcggaaaatggccagactgtgTTCCTCACAGGGGTTTATATCCTGATCGTGGCCGGAGCCGTCATGATGGTGGTCGGGTTCCTGGGCTGCTGTGGAGCAATAAAAGAGTCGGCCTGCATGCTGGGACTGTTCTTCATGTTTCTGCTGGTCATTTTCGCCGCTGAAGTTGCCGCTGGAATCTGGGGTTTGTCTAATAAAGATAAGGTGAGAGATG

Function

GO:

id name namespace
GO:0048916 posterior lateral line development biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2768 Acts upstream of or within posterior lateral line development. Predicted to be located in extracellular region and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including EVL; epidermis; periderm; pronephric duct; and sensory system. Human ortholog(s) of this gene implicated in prostate adenocarcinoma. Orthologous to human CD9 (CD9 molecule).

Ensembl:

ensembl_id ENSDART00000150694

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055208 lncRNA downstream 11107 4224273 ~ 4229155 (-) True XLOC_028443
TCONS_00058003 lncRNA downstream 11194 4208641 ~ 4229068 (-) False XLOC_028443
TCONS_00058004 lncRNA downstream 11194 4213655 ~ 4229068 (-) False XLOC_028443
TCONS_00058005 lncRNA downstream 11194 4220148 ~ 4229068 (-) False XLOC_028443
TCONS_00057317 lncRNA downstream 16729 4207997 ~ 4223533 (-) False XLOC_028443
TCONS_00055216 lncRNA upstream 59495 4321168 ~ 4374704 (-) True XLOC_028446
TCONS_00055221 lncRNA upstream 252765 4514438 ~ 4516508 (-) True XLOC_028450
TCONS_00058006 lncRNA upstream 678794 4940467 ~ 4962892 (-) False XLOC_028461
TCONS_00057318 lncRNA upstream 694279 4955952 ~ 4961841 (-) True XLOC_028461
TCONS_00058009 lncRNA upstream 701284 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055207 mRNA downstream 111075 4120570 ~ 4129187 (-) True XLOC_028440
TCONS_00055206 mRNA downstream 120837 4117002 ~ 4119425 (-) True XLOC_028439
TCONS_00055205 mRNA downstream 120866 4115778 ~ 4119396 (-) False XLOC_028439
TCONS_00055204 mRNA downstream 429245 3806258 ~ 3811017 (-) True XLOC_028434
TCONS_00055203 mRNA downstream 434270 3792950 ~ 3805992 (-) True XLOC_028433
TCONS_00055217 mRNA upstream 114825 4376498 ~ 4387012 (-) True XLOC_028447
TCONS_00055218 mRNA upstream 135830 4397503 ~ 4431975 (-) True XLOC_028448
TCONS_00055219 mRNA upstream 222978 4484651 ~ 4507761 (-) False XLOC_028449
TCONS_00055222 mRNA upstream 264575 4526248 ~ 4535189 (-) True XLOC_028451
TCONS_00055223 mRNA upstream 278550 4540223 ~ 4592287 (-) False XLOC_028452
TCONS_00055185 other downstream 1554172 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2077538 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 3291420 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 3431809 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 3554843 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055220 other upstream 230893 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 284536 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 668738 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 1108383 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 2175091 6436764 ~ 6451732 (-) False XLOC_028490

Expression Profile

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