RNA id: TCONS_00055216


Basic Information

Item Value
RNA id TCONS_00055216
length 331
lncRNA type antisense
GC content 0.40
exon number 3
gene id XLOC_028446
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4321168 ~ 4374704 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTTTGGTAAAGGAGGCTCATTAATGAAAAGCACCATAAAGGAGGCTCATTAATGAAGAACACATTAAAAGGAGGCTCATTAATGAAGAGTGAAGCTTTGGAGACGACAGAATTACATCTAAAACAAGGCCCTCATTTATTAAAACATCTCTTAAGGAAATCTCGATGATGGCTAACTGACAAGCCCGGCTTTCTGGCTCAATCAAAGAttcatgcagtgttggtgggGTGAAGAAGGGCATCCGAAAAAGAAAGTTGACCAAAAattTGACGCACTGAGAAGCGATGTCGAAAGGAGCCATGAAAAAAAATATCACCAATTCCAGTTAt

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0030488 tRNA methylation biological_process
GO:0043414 macromolecule methylation biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0008173 RNA methyltransferase activity molecular_function
GO:0008175 tRNA methyltransferase activity molecular_function
GO:0140098 catalytic activity, acting on RNA molecular_function
GO:0140101 catalytic activity, acting on a tRNA molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135048

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055214 lncRNA downstream 64893 4238000 ~ 4256275 (-) False XLOC_028445
TCONS_00055208 lncRNA downstream 92013 4224273 ~ 4229155 (-) True XLOC_028443
TCONS_00058003 lncRNA downstream 92100 4208641 ~ 4229068 (-) False XLOC_028443
TCONS_00058004 lncRNA downstream 92100 4213655 ~ 4229068 (-) False XLOC_028443
TCONS_00058005 lncRNA downstream 92100 4220148 ~ 4229068 (-) False XLOC_028443
TCONS_00055221 lncRNA upstream 139734 4514438 ~ 4516508 (-) True XLOC_028450
TCONS_00058006 lncRNA upstream 565763 4940467 ~ 4962892 (-) False XLOC_028461
TCONS_00057318 lncRNA upstream 581248 4955952 ~ 4961841 (-) True XLOC_028461
TCONS_00058009 lncRNA upstream 588253 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058011 lncRNA upstream 588253 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055215 mRNA downstream 59495 4240262 ~ 4261673 (-) True XLOC_028445
TCONS_00055212 mRNA downstream 62066 4235305 ~ 4259102 (-) False XLOC_028445
TCONS_00055211 mRNA downstream 62089 4235262 ~ 4259079 (-) False XLOC_028445
TCONS_00055213 mRNA downstream 64801 4235319 ~ 4256367 (-) False XLOC_028445
TCONS_00055209 mRNA downstream 64868 4234994 ~ 4256300 (-) False XLOC_028445
TCONS_00055217 mRNA upstream 1794 4376498 ~ 4387012 (-) True XLOC_028447
TCONS_00055218 mRNA upstream 22799 4397503 ~ 4431975 (-) True XLOC_028448
TCONS_00055219 mRNA upstream 109947 4484651 ~ 4507761 (-) False XLOC_028449
TCONS_00055222 mRNA upstream 151544 4526248 ~ 4535189 (-) True XLOC_028451
TCONS_00055223 mRNA upstream 165519 4540223 ~ 4592287 (-) False XLOC_028452
TCONS_00055185 other downstream 1635078 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2158444 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 3372326 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 3512715 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 3635749 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055220 other upstream 117862 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 171505 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 555707 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 995352 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 2062060 6436764 ~ 6451732 (-) False XLOC_028490

Expression Profile

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