RNA id: TU2377632


Basic Information

Item Value
RNA id TU2377632
length 3380
RNA type TUCP
GC content 0.40
exon number 2
gene id G2079412
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37273506 ~ 37276945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacaacaaaaaatacatatttcagtAACTTCAGTCTTTGTTTTCAGAATTAGTATCAATTTTATGATGAAATAGCATTTTGGTTTTATCCTCCTCTGTCTGAGCCGTAGGTCTGCATGTTTTGGGCCCTTCAATAACACAATGAAAATGAGAGAAAAAGATGATTCAACTACAACCACAGTATACAGttgattttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgaccgcctaggaacagtgggttaactgcctgttcaggggcaaaacgacagatttgtaccttgtcaactcggggatttgaacttgcaacctttcagttactagtccaacactctaaccactaggctaccctgccgccccagttgaagttggaagtttacatacaccttagctaaatacatataaactcaattttttacaattcctgacatttaatccaagtaaaaattccctgttttaggtcagttaggatcaccagtttattttaagaatgtgaactgtcagaataatagtagagagaaggatttatttcagcttttatttctttcatcacattcccagggggtcagaagtttgtatacactcaattagtatttggtagcactgcctttaaattgtttaacattggtcaaacgtttcgggcagccatccacaagcttcccacaataagttgggtgaatgttggcccatttctcctgacagagctggtgtaactgagtcaggtttgtacctccttgctctcacacgctttttcagttctgcccacaaatgttctatatgaggtcagggctttgtgatggccactccaataccttgagtttgttgtccttaagccattttgccacaactggaaatgtgcttggggttattgtccatttggaagacacatttgcgaccaagctttaacttcccgactgatgtcttgagatgttgcttcaatgtatccacatcattttccctgcctcatgatgctgccacccccgtgcttcatggttgggatggtgtttttcggcttgcaagcctccccctttttcctccaaacataacgatggtcattatggccaaacagttctatttttgttccatcagaccagaggacatttctccaaaaagtacgatctttgtccccatgtgcatttgcaaaccgtagtctgacttttttatggcggttttggagcagtggcttcttcctttctgagtggcctttcaggttatgtcgatataggactcgttttactgtggatatagatacttttgtacctgtttcctccagcatcttcacaaggtcctttgctgttgttctgggattgatttgcacatttcacaccgaagtacgttcatccctaggagacagaacgcgtctccttcctgagcggtatgacggctgcgtggtcccatggtgtttatacttgcgtaatattgtttgtacaaatgaacgtggtaccttcaggtgtttggaaattgctcccaaggatgaaccagacttgtggaagtctacaattttttttctgaggtcttggctgatttattttttatttggatttattttgatttttttcatgatgtcaagcaaagaggcactgagtttgaaggtagaccttgaaatacatccacaggtacacctccaattgactcaaatgatgtcaattagcctatcaggaagccattacatcattttctggatttttccaagctgtttaaaggcacagtcaatttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaaatgacttgtgtcattcacaaagtagatgtcctaaccgacttgccaaaactatatagtttgttaacaagaaatttgtggagtggttgaaaaacgagttttaatgactccaacctaagtgtctgcaaacttccgacttcaactgtataacatGAAATAATTAAAATAGTCCTCATTGTAATAATTACATAGAATCAAGTAACACTTCATAAACTGTTATTTACAGCATTTATATATAGCCTATGAGATTACATCACAGGTAAGAATCCTGCGTTTCCGTGGAGATGGAGATTGGCACATGACGGAGCCCTGACTCGTTGACACAAACACACTAACGTAAAACAAAGTTAAGAGAGACAACTGTCTAAAGTAATAATTTAAGAGCAGACTGTATTTACATCAGAGTTtctgcatcatcatcatcaaaataCATATGAAGAAGGCAGATCTGGAATGGATGGgcggaaaacaacaacaacaacaacaacaggggaAAAGAGGAAGTTAATCTGTGTTCATCAGGGGTCAGAGTTCACAGGTATACAGCACTAGAGCGAGGCTTCAGATCGCTAGCCTACCTGAATGCCAATAGAACAGTTACAATCTGTACAATAACATGAAGTCAAAGTCAGtgaagtcacacacacagacatcctgAGGGAGAATCATCTACAAAATATATGAAGCTATATGCAGTCCATCCATATATTCACCTATAGCCCACTCACCTAACAAATATATTGACCTGTACGCCCCTGTCACCTAACCAAGATCCCCAGTTCATTCACCTAACAAATATATTGACCTGTACGCCCCTGTCACCTAACCAATATCCCCAGTTCATTTACCTAACAAATATATTGACCTGTACGCCCTTTTAACAAATATATTGACCTGTATGGCCTTAATTCTTccacatatacagtatgtaagcCCTGACATGTGGTGAGGCTAAGCTGTTGCTCTGGCTTCACCGAGCAGCAGTTTCACACATTAGTTTAACATTTAGGTGACTGATTGATTGGAGTTGAGTGGTAGTGTGTTTTAAACTCCTGAGACAGTGAACTCACTGTTAACCAACACAATGATAACCAACACACTGTTAACCAACACAATGATAACCAACACACTGATAACCAACACACTGTTAACCGACACACTATCATCTATAGGTCTGTTCATCAACACACTGTCATCTATAGGTCTGTTCATCAACACACTGTCATCTATAGGTCTGTTCATCAACACACTGTCATCTATAGGTCTGTTCATCAACACACTGTCATCTATAGGTCTGTTCATCAACACACTGTCATCTATAGGTCTGTTCATCAACACACTGTCATCTATAGGTCTGTTCATCAACACACTGTCATCTATAGGTCTGTTCATCAACACACTGTCATCTACAGGTCTGTTCATCAACACACTGTCATCTACAGGTCTGTTCATCAACACACTGTCATCTATAGGTCTGTTCATCAACACACTGGAGATACTGTTTGGCCTCTGTGTCTGTTTGTATCTATGGTCCAACATGGCAAGCTCTGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377640 lncRNA downstream 31578 37241487 ~ 37241928 (-) True G2079419
TU2377633 lncRNA downstream 44242 37228911 ~ 37229264 (-) True G2079413
TU2377616 lncRNA downstream 72767 37200437 ~ 37200739 (-) True G2079403
TU2377615 lncRNA downstream 73956 37198952 ~ 37199550 (-) True G2079402
TU2377611 lncRNA downstream 79799 37193455 ~ 37193707 (-) True G2079398
TU2377671 lncRNA upstream 2959 37279904 ~ 37284080 (-) True cep57
TU2377679 lncRNA upstream 9803 37286748 ~ 37288167 (-) True G2079437
TU2377691 lncRNA upstream 41377 37318322 ~ 37318564 (-) True G2079449
TU2377697 lncRNA upstream 82186 37359131 ~ 37359337 (-) True G2079455
TU2378097 lncRNA upstream 89719 37366664 ~ 37367209 (-) False LOC110508027
XR_005040016.1 mRNA downstream 421886 36850895 ~ 36851620 (-) True LOC118944723
XR_005040079.1 mRNA downstream 679856 36579045 ~ 36593650 (-) True LOC110507945
XM_036965243.1 mRNA downstream 713374 36552844 ~ 36560132 (-) False LOC110507944
XM_021588369.2 mRNA downstream 713375 36552845 ~ 36560131 (-) False LOC110507944
NM_001160517.2 mRNA downstream 827626 36442285 ~ 36445880 (-) True hs020
XM_036965036.1 mRNA upstream 749 37277694 ~ 37295837 (-) False cep57
XM_036964618.1 mRNA upstream 19482 37296427 ~ 37317519 (-) False LOC110508024
XM_036964619.1 mRNA upstream 19757 37296702 ~ 37314644 (-) False LOC110508024
XM_036964617.1 mRNA upstream 19757 37296702 ~ 37317519 (-) False LOC110508024
XM_036964620.1 mRNA upstream 27238 37304183 ~ 37317523 (-) True LOC110508024
TU2377644 other downstream 17480 37254882 ~ 37256026 (-) True G2079423
TU2377502 other downstream 345374 36922262 ~ 36928132 (-) True G2079301
TU2377448 other downstream 412149 36794768 ~ 36861357 (-) True G2079261
TU2376880 other downstream 747866 36525000 ~ 36525640 (-) False G2078826
TU2376791 other downstream 884122 36383185 ~ 36389384 (-) True G2078753
TU2377664 other upstream 756 37277701 ~ 37279647 (-) False cep57
TU2377668 other upstream 756 37277701 ~ 37284080 (-) False cep57
TU2377669 other upstream 756 37277701 ~ 37279647 (-) False cep57
TU2378102 other upstream 132288 37409233 ~ 37414214 (-) False G2079746
TU2378104 other upstream 135354 37412299 ~ 37414214 (-) True G2079746

Expression Profile