Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055218 |
| length | 1070 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 2 |
| gene id | XLOC_028448 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 4397503 ~ 4431975 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0033138 | positive regulation of peptidyl-serine phosphorylation | biological_process |
| GO:0048812 | neuron projection morphogenesis | biological_process |
| GO:0043069 | negative regulation of programmed cell death | biological_process |
| GO:0007613 | memory | biological_process |
| GO:0021675 | nerve development | biological_process |
| GO:0038180 | nerve growth factor signaling pathway | biological_process |
| GO:0050804 | modulation of chemical synaptic transmission | biological_process |
| GO:0045664 | regulation of neuron differentiation | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0043524 | negative regulation of neuron apoptotic process | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0030424 | axon | cellular_component |
| GO:0030425 | dendrite | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0008021 | synaptic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005102 | signaling receptor binding | molecular_function |
| GO:0005163 | nerve growth factor receptor binding | molecular_function |
| GO:0005165 | neurotrophin receptor binding | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| id | description |
|---|---|
| ko04010 | MAPK signaling pathway |
| ko04014 | Ras signaling pathway |
| ko04151 | PI3K-Akt signaling pathway |
| ko04722 | Neurotrophin signaling pathway |
| ko04052 | Cytokines and growth factors |
| id | description |
|---|---|
| ZDB-GENE-031118-66 | Predicted to enable growth factor activity and nerve growth factor receptor binding activity. Acts upstream of or within negative regulation of programmed cell death and peripheral nervous system development. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; dendrite; and synaptic vesicle. Is expressed in several structures, including brain; cardiovascular system; otic placode; pancreas primordium; and retina. Human ortholog(s) of this gene implicated in Alzheimer's disease and asthma. Orthologous to human NTF3 (neurotrophin 3). |
| ensembl_id | ENSDART00000082046 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00055216 | lncRNA | downstream | 22799 | 4321168 ~ 4374704 (-) | True | XLOC_028446 |
| TCONS_00055214 | lncRNA | downstream | 141228 | 4238000 ~ 4256275 (-) | False | XLOC_028445 |
| TCONS_00055208 | lncRNA | downstream | 168348 | 4224273 ~ 4229155 (-) | True | XLOC_028443 |
| TCONS_00058004 | lncRNA | downstream | 168435 | 4213655 ~ 4229068 (-) | False | XLOC_028443 |
| TCONS_00055221 | lncRNA | upstream | 82463 | 4514438 ~ 4516508 (-) | True | XLOC_028450 |
| TCONS_00058006 | lncRNA | upstream | 508492 | 4940467 ~ 4962892 (-) | False | XLOC_028461 |
| TCONS_00057318 | lncRNA | upstream | 523977 | 4955952 ~ 4961841 (-) | True | XLOC_028461 |
| TCONS_00058009 | lncRNA | upstream | 530982 | 4962957 ~ 4966824 (-) | False | XLOC_028462 |
| TCONS_00058011 | lncRNA | upstream | 530982 | 4962957 ~ 4966824 (-) | False | XLOC_028462 |
| TCONS_00055217 | mRNA | downstream | 10491 | 4376498 ~ 4387012 (-) | True | XLOC_028447 |
| TCONS_00055215 | mRNA | downstream | 135830 | 4240262 ~ 4261673 (-) | True | XLOC_028445 |
| TCONS_00055212 | mRNA | downstream | 138401 | 4235305 ~ 4259102 (-) | False | XLOC_028445 |
| TCONS_00055211 | mRNA | downstream | 138424 | 4235262 ~ 4259079 (-) | False | XLOC_028445 |
| TCONS_00055213 | mRNA | downstream | 141136 | 4235319 ~ 4256367 (-) | False | XLOC_028445 |
| TCONS_00055219 | mRNA | upstream | 52676 | 4484651 ~ 4507761 (-) | False | XLOC_028449 |
| TCONS_00055222 | mRNA | upstream | 94273 | 4526248 ~ 4535189 (-) | True | XLOC_028451 |
| TCONS_00055223 | mRNA | upstream | 108248 | 4540223 ~ 4592287 (-) | False | XLOC_028452 |
| TCONS_00055224 | mRNA | upstream | 108543 | 4540518 ~ 4570475 (-) | False | XLOC_028452 |
| TCONS_00055226 | mRNA | upstream | 169840 | 4601815 ~ 4612116 (-) | True | XLOC_028453 |
| TCONS_00055185 | other | downstream | 1711413 | 2675106 ~ 2686090 (-) | False | XLOC_028423 |
| TCONS_00055166 | other | downstream | 2234779 | 2060524 ~ 2162724 (-) | False | XLOC_028412 |
| TCONS_00055131 | other | downstream | 3448661 | 937229 ~ 948842 (-) | True | XLOC_028386 |
| TCONS_00055123 | other | downstream | 3589050 | 804147 ~ 808453 (-) | True | XLOC_028380 |
| TCONS_00055111 | other | downstream | 3712084 | 683052 ~ 685419 (-) | True | XLOC_028374 |
| TCONS_00055220 | other | upstream | 60591 | 4492566 ~ 4496791 (-) | True | XLOC_028449 |
| TCONS_00055225 | other | upstream | 114234 | 4546209 ~ 4570805 (-) | True | XLOC_028452 |
| TCONS_00055239 | other | upstream | 498436 | 4930411 ~ 4932524 (-) | True | XLOC_028460 |
| TCONS_00055263 | other | upstream | 938081 | 5370056 ~ 5371622 (-) | True | XLOC_028470 |
| TCONS_00055293 | other | upstream | 2004789 | 6436764 ~ 6451732 (-) | False | XLOC_028490 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000066_01640177_01643928.mRNA | True | 2770 | mRNA | 0.44 | 3 | CI01000066 | 1640177 ~ 1645798 (+) |
