RNA id: TCONS_00055219


Basic Information

Item Value
RNA id TCONS_00055219
length 3422
RNA type mRNA
GC content 0.51
exon number 14
gene id XLOC_028449
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4484651 ~ 4507761 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACCGCAGCCTGTTTGAGTCCCTGCCAACCCGCGGCTCAAGAAATGGAACAGACCCGGAACTCCAGTTCCTTATTGATCCACCTAAAACAATCTTTGCGGAGTCCCAATGCGTTCACCACAAAGTAATGCTGAACTTTAAAGAGAAATAAACCATGTCAGCCGCGGTGGAAGTGGCGAAAGAGGAGCTGAAGGAGGTGAACATATGTGACATCTGCCCGGAGGAGGAGAGCGGAGTTTTCCTCAGCGCAGGTGCGTCCTACCTGGACGGCTTTTCGGGGTTTCATAAGTGGGTCTcaaagattgagGTGTCGGATGGAGACTGTGAGAAAACGTCATCCAGGAAGGCTCACGAGGAGGAGAAAGGAGGTCTGTATTTTGATCGAGAGGAGCTGAAAGACTCCCGGGCTTCATCTTTGGTGGATTGTTTGCTGGTGGAGCTTTATGACACGTACAGTCACGGTGTCCCAGGCTTGGACAGCTCCACTGAGGCCTCCAGCTCGGACGCTTTTCTGGGCAGGAGCAACAGCGGCTCTAGCTTTCTGCAGGAGCTCCAGGAGAAGCACACCAGGCGCCATCAGGTCAAATATCTGGCTCAGAAAGGTCCAGAAGAGCTGAAGTGGATTGTCCAGGAGGTGAAATACCGCATCGCTGTACAGTCGGCTAAACTAGTGCGGCAGGCCAAAAGGAAAGATCGACTCCGGCAGAAGTTCCAGAAGAACTGCGATATCGTGACCGCCTGCCTGCAAGCCGTCTCGCAGAAAAGACGAGTGGACACCAGGTTGAAGTTCACTATCGAACCCTCTCTAGGCAAGAACGGCTTTCAGCAATGGTACGACGCTCTGAAAGCAGTGGCCAGACTGCCGGTCGGCATTCCCAAAGAGTGGAGGAAAAGAGTCTGGCTGACCCTGGCTGACCAGTATCTTCACAGCATCTCTATAGACTGGGAGAAAACCATGAGATTTGCCTTCAATGACCGCAGCAATCCAGACGATGACTCTTTGGGAATACAAATAGTAAAGGATCTGCACCGGACAGGCTGCAGCTCTTACTGTGGGCAGGAGGCGGAGCAGGACCGGGTGGTGCTGAAGCGGGTGCTGCTGGCTTATGCCCGCTGGAACAAGACTGTAGGATACTGTCAGGGATTTAATGTGCTGGCGGCACTTATCCTGGAGGTCACTGAGGGCAATGAAGGAGACGCTTTAAAGGTGATGATCTATTTGATCGACAAGGTGCTTCCGGACAGTTATTTCGCCAATAATCTGCGAGCACTCTCTGTGGACATGGCCGTGTTCAGAGACCTGCTGCGGCTGAAGCTTCCAGAACTTTCTCAGCACCTTCACCACCTCCAAAAAGTGGCCAATCGCGAAGCTGGAGGCAGCTACGAGCCTCCACTCACCAACGTTTTCACCATGCAGTGGTTTCTGACCATGTTTGCCACGTGTTTGCCTCATCACACCGTGCTGAAGATCTGGGATTCGGTGTTTTTTGAGGGATCAGAAATGCTGCTGCGTGTCGCTCTGGCCATTTGGGCCAAACTGGGAGAGCGTATTGAGGAGTGTCAGACAGCAGatgaattttacagtattatgGGCTGCCTGACGCAAGAAATGCTGGAACACAAGCTCATCGACTCCAATGAACTCATGCAGACGGTTTACTCCATGGCTCCGTTCCCATTCCCACAGCTGGCTGAGCTCAGGGAGAAATACACCTATAACATCACACCGTTCCCTGCGCCGGTCAGAGCCAACAGCAGTCTGGCCCTCCATGGTTGGGAGAGTGATGATGATGCTGACATGGATGATGAAGACTCTATCGTCACCGCTCTGGGCTGTCTGGGACCACTAGGTGGCCTCCTGGCCCCTGAGATCCAAAGATACCAAAGGCACCTCAAAGATCAGAGAGCGGAGCAGAGCTGTAATGGCAGTAATATGGCAGAGCTCAGTCCCGGGGCGGTTGGCGCAGGACGAGCCGAACACCAGGCTGCCATCAACAGCATGATGCTGGAGCGCATGAGCACTGACATCAGCGCCCTGAAGAAACAGTACTCGCGTATTAAACAGAAACAACAGCAGCAGGCCGGACTGCTCTACATTCACACAGATAAGTGTCCAGCCACCAGTGTTCTTGCCTCCCAAATTGGTCCATCCCCAGTGGTCAATCACCTTCTCCTGGGCAGGAGACCAAGACCCTGTGAACGATCCTTAAAGAATGGTATGATCCATAACGGTGGATCTCCTCAATCCCACTCAACGCCGCTTCTGGATCAGATGGTTCGGTCCAGACATCATTCGCCCTGGCGCACGCATGTTCGAGCACACCGGAGGAACATCGCAAGAGCGAGGGCTCAGCTCGGCTTTGATGACTCTCTGGAGGCAGAAGACGATCAGACGGATGAAAGCAAAACTGAAGGAGCATCTATGGAGGGAGAGGAGACCAAATCCGAGGAAGCAGACGAAGATAAAATTGAAAACACGGCAGCTGGAGGCTCAGATGTTTCTAAGCAAGAACTGCAGGAGATTGATAGACAGCTGTCTGCACTAGAACTGGACCCGGAATCTTCACCAGATCCGTCAACTCCAGAACCAGCTTTGGATCCAGACCCACAATCAGATCCAACTATTACTCCAGAACCACAGGCAGATCCCAATCCCACTACTCCAGATCCTGATCCCACCATTCAAGATCCCAGTTTCACCATTCAAAATCCCAATTCCACCATTCAAAATCCCAGTCCCACCATTCAAGAATCCAAACCCACCACTAAAGATTCCTGTTTCACCATTCAAAATCCCAATTCAATTGTTCAAAGTCCCAGTTCTGCTGTTCAAAATCCCAGTCTCGCCATTCAAAATCCAAATACCATTGTTCAAAATCCCAACTCCTCCATTCAAAATCCCAATCCCACCATTCAAGATCCCAATCCCACAGATCAAAATCCCAATTCCAGCATTCAAAACCTCAATATCACCATTCAAGATGTCAATCCCACCACTCCACCTCAGGCTCCGCTCACATCCAGCCGCCGTCCCGGTTCCGACTCCTCCAGCTCCGAAAGTGGAAGCTCCCTGAGAAGAAGTGCTTCATCATTAGCAGGAGATCCTCCAAAAGCACAGCAGCAGATCTACTCCCCATTCCCTTGCATCAAAACACCCCGAAAATCCACGGCTGCAAGAAACCTGGGTCTCTACGGCCCAACAGCCAGAACTCCAAACGTACACTTCCCACAGATGAGCAGAAGCATGAACCGTGTAGGAAACACCACAAAACGCCGGTGATGAGTTGTAGACTGCTAATAATAAAGAAGAGCACTTATTGGGTTCCTCTTCATTTGGGTTTAAATTCCAGACTTGTGAAAGCACATGCATTTTGAAGTCTAATATGCTTCCAGATACTtaagcactgcaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-2064 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D30 (TBC1 domain family member 30).

Ensembl:

ensembl_id ENSDART00000130588

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055216 lncRNA downstream 109947 4321168 ~ 4374704 (-) True XLOC_028446
TCONS_00055214 lncRNA downstream 228376 4238000 ~ 4256275 (-) False XLOC_028445
TCONS_00055208 lncRNA downstream 255496 4224273 ~ 4229155 (-) True XLOC_028443
TCONS_00058004 lncRNA downstream 255583 4213655 ~ 4229068 (-) False XLOC_028443
TCONS_00055221 lncRNA upstream 6677 4514438 ~ 4516508 (-) True XLOC_028450
TCONS_00058006 lncRNA upstream 432706 4940467 ~ 4962892 (-) False XLOC_028461
TCONS_00057318 lncRNA upstream 448191 4955952 ~ 4961841 (-) True XLOC_028461
TCONS_00058009 lncRNA upstream 455196 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058011 lncRNA upstream 455196 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055218 mRNA downstream 52676 4397503 ~ 4431975 (-) True XLOC_028448
TCONS_00055217 mRNA downstream 97639 4376498 ~ 4387012 (-) True XLOC_028447
TCONS_00055215 mRNA downstream 222978 4240262 ~ 4261673 (-) True XLOC_028445
TCONS_00055212 mRNA downstream 225549 4235305 ~ 4259102 (-) False XLOC_028445
TCONS_00055211 mRNA downstream 225572 4235262 ~ 4259079 (-) False XLOC_028445
TCONS_00055222 mRNA upstream 18487 4526248 ~ 4535189 (-) True XLOC_028451
TCONS_00055223 mRNA upstream 32462 4540223 ~ 4592287 (-) False XLOC_028452
TCONS_00055224 mRNA upstream 32757 4540518 ~ 4570475 (-) False XLOC_028452
TCONS_00055226 mRNA upstream 94054 4601815 ~ 4612116 (-) True XLOC_028453
TCONS_00055227 mRNA upstream 119033 4626794 ~ 4706893 (-) True XLOC_028454
TCONS_00055185 other downstream 1798561 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2321927 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 3535809 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 3676198 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 3799232 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055225 other upstream 38448 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 422650 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 862295 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1929003 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 2057892 6565653 ~ 6567266 (-) True XLOC_028490

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_01589883_01604443.mRNA True 3844 mRNA 0.50 15 CI01000066 1589883 ~ 1605098 (+)