RNA id: TCONS_00055221


Basic Information

Item Value
RNA id TCONS_00055221
length 394
lncRNA type antisense
GC content 0.48
exon number 2
gene id XLOC_028450
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4514438 ~ 4516508 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTGTCTGATGAGCCAGTGTTTGTCCTGAAAAGTGGTTCAAACGCTGTCAGATAAGCAAAAATAAACACCCAGTCAGTATATTGAAGACACTTGAGGTTTGTACCTTCCCATGTATGTTGAAGTTGGGGTCTCGTGGAGCTTTGAGGTCAGGAAAACTGCTGTCGTACTGCGGAGCGGCCGTCCAGGGCGAGTGTGGCGCCGGTGTGGACACCATCATGAAGAAAGGCCTGCGGTTTGACTTGTTTTCCAGGAAGTCGATGGAAACATTGGCCTGGATGGAATCAGACATGGATGAGCCACTAACTCGGGTAGATCATTCGCTGTTCTGTAATTTCATGAACACAAGATCTGCTCCTACCAGGACATCTGTAAGTTTTCTTACCAGGGCGAAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156410

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055216 lncRNA downstream 139734 4321168 ~ 4374704 (-) True XLOC_028446
TCONS_00055214 lncRNA downstream 258163 4238000 ~ 4256275 (-) False XLOC_028445
TCONS_00055208 lncRNA downstream 285283 4224273 ~ 4229155 (-) True XLOC_028443
TCONS_00058003 lncRNA downstream 285370 4208641 ~ 4229068 (-) False XLOC_028443
TCONS_00058006 lncRNA upstream 423959 4940467 ~ 4962892 (-) False XLOC_028461
TCONS_00057318 lncRNA upstream 439444 4955952 ~ 4961841 (-) True XLOC_028461
TCONS_00058009 lncRNA upstream 446449 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058011 lncRNA upstream 446449 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058013 lncRNA upstream 446449 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055219 mRNA downstream 6677 4484651 ~ 4507761 (-) False XLOC_028449
TCONS_00055218 mRNA downstream 82463 4397503 ~ 4431975 (-) True XLOC_028448
TCONS_00055217 mRNA downstream 127426 4376498 ~ 4387012 (-) True XLOC_028447
TCONS_00055215 mRNA downstream 252765 4240262 ~ 4261673 (-) True XLOC_028445
TCONS_00055212 mRNA downstream 255336 4235305 ~ 4259102 (-) False XLOC_028445
TCONS_00055222 mRNA upstream 9740 4526248 ~ 4535189 (-) True XLOC_028451
TCONS_00055223 mRNA upstream 23715 4540223 ~ 4592287 (-) False XLOC_028452
TCONS_00055224 mRNA upstream 24010 4540518 ~ 4570475 (-) False XLOC_028452
TCONS_00055226 mRNA upstream 85307 4601815 ~ 4612116 (-) True XLOC_028453
TCONS_00055227 mRNA upstream 110286 4626794 ~ 4706893 (-) True XLOC_028454
TCONS_00055220 other downstream 17647 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 1828348 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2351714 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 3565596 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 3705985 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055225 other upstream 29701 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 413903 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 853548 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1920256 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 2049145 6565653 ~ 6567266 (-) True XLOC_028490

Expression Profile

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