Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055229 |
| length | 4632 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 11 |
| gene id | XLOC_028455 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 4712410 ~ 4751983 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0034976 | response to endoplasmic reticulum stress | biological_process |
| GO:0030968 | endoplasmic reticulum unfolded protein response | biological_process |
| GO:0060628 | regulation of ER to Golgi vesicle-mediated transport | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0002062 | chondrocyte differentiation | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0006986 | response to unfolded protein | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0003330 | regulation of extracellular matrix constituent secretion | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0035497 | cAMP response element binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070112-1542 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Acts upstream of or within regulation of ER to Golgi vesicle-mediated transport and regulation of extracellular matrix constituent secretion. Predicted to be located in endoplasmic reticulum. Is expressed in cranial cartilage and pectoral fin. Orthologous to human CREB3L2 (cAMP responsive element binding protein 3 like 2). |
| ensembl_id | ENSDART00000158466 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00055221 | lncRNA | downstream | 195902 | 4514438 ~ 4516508 (-) | True | XLOC_028450 |
| TCONS_00055216 | lncRNA | downstream | 337706 | 4321168 ~ 4374704 (-) | True | XLOC_028446 |
| TCONS_00055214 | lncRNA | downstream | 456135 | 4238000 ~ 4256275 (-) | False | XLOC_028445 |
| TCONS_00055208 | lncRNA | downstream | 483255 | 4224273 ~ 4229155 (-) | True | XLOC_028443 |
| TCONS_00058005 | lncRNA | downstream | 483342 | 4220148 ~ 4229068 (-) | False | XLOC_028443 |
| TCONS_00058006 | lncRNA | upstream | 188484 | 4940467 ~ 4962892 (-) | False | XLOC_028461 |
| TCONS_00057318 | lncRNA | upstream | 203969 | 4955952 ~ 4961841 (-) | True | XLOC_028461 |
| TCONS_00058009 | lncRNA | upstream | 210974 | 4962957 ~ 4966824 (-) | False | XLOC_028462 |
| TCONS_00058011 | lncRNA | upstream | 210974 | 4962957 ~ 4966824 (-) | False | XLOC_028462 |
| TCONS_00058013 | lncRNA | upstream | 210974 | 4962957 ~ 4966824 (-) | False | XLOC_028462 |
| TCONS_00055227 | mRNA | downstream | 5517 | 4626794 ~ 4706893 (-) | True | XLOC_028454 |
| TCONS_00055226 | mRNA | downstream | 100294 | 4601815 ~ 4612116 (-) | True | XLOC_028453 |
| TCONS_00055223 | mRNA | downstream | 120123 | 4540223 ~ 4592287 (-) | False | XLOC_028452 |
| TCONS_00055224 | mRNA | downstream | 141935 | 4540518 ~ 4570475 (-) | False | XLOC_028452 |
| TCONS_00055222 | mRNA | downstream | 177221 | 4526248 ~ 4535189 (-) | True | XLOC_028451 |
| TCONS_00055231 | mRNA | upstream | 639 | 4752622 ~ 4756349 (-) | False | XLOC_028456 |
| TCONS_00055232 | mRNA | upstream | 1077 | 4753060 ~ 4755622 (-) | True | XLOC_028456 |
| TCONS_00055233 | mRNA | upstream | 6018 | 4758001 ~ 4780667 (-) | False | XLOC_028457 |
| TCONS_00055234 | mRNA | upstream | 6481 | 4758464 ~ 4780510 (-) | True | XLOC_028457 |
| TCONS_00055235 | mRNA | upstream | 30738 | 4782721 ~ 4795205 (-) | True | XLOC_028458 |
| TCONS_00055225 | other | downstream | 141605 | 4546209 ~ 4570805 (-) | True | XLOC_028452 |
| TCONS_00055220 | other | downstream | 215619 | 4492566 ~ 4496791 (-) | True | XLOC_028449 |
| TCONS_00055185 | other | downstream | 2026320 | 2675106 ~ 2686090 (-) | False | XLOC_028423 |
| TCONS_00055166 | other | downstream | 2549686 | 2060524 ~ 2162724 (-) | False | XLOC_028412 |
| TCONS_00055131 | other | downstream | 3763568 | 937229 ~ 948842 (-) | True | XLOC_028386 |
| TCONS_00055239 | other | upstream | 178428 | 4930411 ~ 4932524 (-) | True | XLOC_028460 |
| TCONS_00055263 | other | upstream | 618073 | 5370056 ~ 5371622 (-) | True | XLOC_028470 |
| TCONS_00055293 | other | upstream | 1684781 | 6436764 ~ 6451732 (-) | False | XLOC_028490 |
| TCONS_00055295 | other | upstream | 1813670 | 6565653 ~ 6567266 (-) | True | XLOC_028490 |
| TCONS_00055299 | other | upstream | 2433212 | 7185195 ~ 7185311 (-) | True | XLOC_028494 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000066_01468657_01476221.mRNA | True | 1491 | mRNA | 0.56 | 11 | CI01000066 | 1468657 ~ 1476254 (+) |
