RNA id: TCONS_00055230


Basic Information

Item Value
RNA id TCONS_00055230
length 319
RNA type mRNA
GC content 0.48
exon number 1
gene id XLOC_028455
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4712410 ~ 4751983 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCCCGCCCCCAAATTCCTGCTCGTCTGTGAAGGGGCGACATTTCTCAAGGAAGCCGAGAGGAAAGTTCCGTGAACATTGGCGACAGACGCTCAACTTATGATCAACTTTTAGCTGACTGTAAATTAGTCTTTCTGAATCGCGGTCTGGCGAGTAATTTGACGGATACGCTGATAAACAGCCGTTTCTGGGGTCGTTGAAGCGACGCTGCGCCTCCGTGACGATGGAAATAATGGATAGCGGAGAGCCGTTTTTACAATGGGACAAAAATCTCAGCGAATTGTCAGAAGCCggtgaaaatgacattttatacaGCACT

Function

GO:

id name namespace
GO:0034976 response to endoplasmic reticulum stress biological_process
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0060628 regulation of ER to Golgi vesicle-mediated transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002062 chondrocyte differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0006986 response to unfolded protein biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0003330 regulation of extracellular matrix constituent secretion biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0035497 cAMP response element binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1542 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Acts upstream of or within regulation of ER to Golgi vesicle-mediated transport and regulation of extracellular matrix constituent secretion. Predicted to be located in endoplasmic reticulum. Is expressed in cranial cartilage and pectoral fin. Orthologous to human CREB3L2 (cAMP responsive element binding protein 3 like 2).

Ensembl:

ensembl_id ENSDART00000147436

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055221 lncRNA downstream 235155 4514438 ~ 4516508 (-) True XLOC_028450
TCONS_00055216 lncRNA downstream 376959 4321168 ~ 4374704 (-) True XLOC_028446
TCONS_00055214 lncRNA downstream 495388 4238000 ~ 4256275 (-) False XLOC_028445
TCONS_00055208 lncRNA downstream 522508 4224273 ~ 4229155 (-) True XLOC_028443
TCONS_00058005 lncRNA downstream 522595 4220148 ~ 4229068 (-) False XLOC_028443
TCONS_00058006 lncRNA upstream 188486 4940467 ~ 4962892 (-) False XLOC_028461
TCONS_00057318 lncRNA upstream 203971 4955952 ~ 4961841 (-) True XLOC_028461
TCONS_00058009 lncRNA upstream 210976 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058011 lncRNA upstream 210976 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058013 lncRNA upstream 210976 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055227 mRNA downstream 44770 4626794 ~ 4706893 (-) True XLOC_028454
TCONS_00055226 mRNA downstream 139547 4601815 ~ 4612116 (-) True XLOC_028453
TCONS_00055223 mRNA downstream 159376 4540223 ~ 4592287 (-) False XLOC_028452
TCONS_00055224 mRNA downstream 181188 4540518 ~ 4570475 (-) False XLOC_028452
TCONS_00055222 mRNA downstream 216474 4526248 ~ 4535189 (-) True XLOC_028451
TCONS_00055231 mRNA upstream 641 4752622 ~ 4756349 (-) False XLOC_028456
TCONS_00055232 mRNA upstream 1079 4753060 ~ 4755622 (-) True XLOC_028456
TCONS_00055233 mRNA upstream 6020 4758001 ~ 4780667 (-) False XLOC_028457
TCONS_00055234 mRNA upstream 6483 4758464 ~ 4780510 (-) True XLOC_028457
TCONS_00055235 mRNA upstream 30740 4782721 ~ 4795205 (-) True XLOC_028458
TCONS_00055225 other downstream 180858 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 254872 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2065573 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2588939 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 3802821 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055239 other upstream 178430 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 618075 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1684783 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1813672 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 2433214 7185195 ~ 7185311 (-) True XLOC_028494

Expression Profile

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