RNA id: TCONS_00055234


Basic Information

Item Value
RNA id TCONS_00055234
length 1662
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_028457
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4758001 ~ 4780667 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCCATGGCCAGAACCAGCGCGGACGGGCAGAATAACAGCAAACTGGACTCTTTCCTGAAGAGAAACACCAGTCGGGATGTGTACGAGCGGATCCGAGTGTCCGAGCCGTGTGTGGTGGTGTCGGGATCGGTCAAGAAGGTGTTCATGCATGTGATTTTGAGCGACGAGTGCGTGTATTTGAGCGAGTATCACCCGCGCGCGCTGCGAGAGGCGCTCAGTTTCAGACACATCACGAGCATCGAGCTGATCAATGATTTGCCTGATTTTCTGAGTGGACAGGACCGTGAGCGATCTCTGCACATCCGTGTTGTTTATACCACAAAGAATGCCGGGGAAAAGAGCGAGAGAACCAAAGGATCCAGCAAAATGACTGAATCTCCATCACGAGCATATAACTCAGCTgaagaagaagaggaagaagaggaaaGTGTGATTCCTAAAAGACGTTCGGCCTCCTGTCCAAACCCAGTAGTGCCGCATCTGTTTAATTCCTCCCCTGCTTCTCCTCTACCAAACATCAGCAATACTGAGCACAGATGGAGGAAAAGCCCTGAAGCGTTCAGTCACAGGGGTTCAGTCCTGAGCAGAGCCATAAGGAGAGCAACAACAACAGACAAGCAGAAGGGCGAGGAGAAAGAGGAAGAGCTGCACCTTTACGCCGTTTCTCCATCCTCACGAATATTCCTTCACCTCCAGAGCTCCTGGAGCAGCTACATCATAAGATCAACTTTGATGCTGGACCCAGTGTACATGAAGAAATGTGGCCTGTCCTCCTCTTCCCCTAAGAAACCGATAAATCATAAGATCAGCTGGGAACGGACGTGTCAGTTGTTCAGTCAGTTGAGCGGAGAGCTGCTCCAGGAAAACATCAGTCTGGAGAGTCTGTATTTACTGCTGCAGGAGCTGCGCACGGCCACATACCGAAACCCCACCATCAAAAAACTCTTCTGGAGGTTTTTGTGTAATTCATgctgtttctgtttatttTTTCTGCAACAGTATGAAGATAAAGACAATGTCTCTGTGTCCTGCAGGCTTTGCACTGTAGTGGTTCAGATATTAAGCCTGATGTTCAGGGAAACGGAGATCGAACCAAAGAGGCTCAGCATGTTGACGGCCAAAAAAGGGGACACTACAGCAAACATGCTGCTCGCTTTAGTGTGTGATCCAGATCTTCAGCTGCCAGACACAACTAACGACACCAAATCATCAATTAATAAGCTGCAGAGTCTGCAGGCGGACTATCTGGATGCAGCATCTGCTCTGCTGTTTGAGGTGGTTGTGCTATGTCAGGAGGCAAGTCGCACACCTGCTCTGGGACATTTCCTTACCATTGGCTGGGTGTTTCGATTGCTTAAACCACATCCATTCTTACTCCCATTTGTTGGATATCAGGCCCAACAGACGGTTCTGGTTCTCTCAGGCCCGCAGTTTCCCATCAGCCCCTCTCAGGCGGTTCTTCTGTACCAGCGATGCTGTGTTTTATTAGCCTGTCTGCAGCACAGCCCCTGTTTGAGCAAATACATCAGGACAGGATTCAAGGAGGAGTTCAGGTCCTTCATGAATCTGGAGGACAAACTTCCCGATCACTATCCCATCAGTCAACCTGCCCAGCGGCTTCTTTCTCAACTCCTCAGTGTGGTCCTAGAGAGACCCTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-151 Orthologous to human C12orf56 (chromosome 12 open reading frame 56).

Ensembl:

ensembl_id ENSDART00000109609

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055221 lncRNA downstream 241956 4514438 ~ 4516508 (-) True XLOC_028450
TCONS_00055216 lncRNA downstream 383760 4321168 ~ 4374704 (-) True XLOC_028446
TCONS_00055214 lncRNA downstream 502189 4238000 ~ 4256275 (-) False XLOC_028445
TCONS_00055208 lncRNA downstream 529309 4224273 ~ 4229155 (-) True XLOC_028443
TCONS_00058005 lncRNA downstream 529396 4220148 ~ 4229068 (-) False XLOC_028443
TCONS_00058006 lncRNA upstream 159957 4940467 ~ 4962892 (-) False XLOC_028461
TCONS_00057318 lncRNA upstream 175442 4955952 ~ 4961841 (-) True XLOC_028461
TCONS_00058009 lncRNA upstream 182447 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058011 lncRNA upstream 182447 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058013 lncRNA upstream 182447 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055231 mRNA downstream 2115 4752622 ~ 4756349 (-) False XLOC_028456
TCONS_00055232 mRNA downstream 2842 4753060 ~ 4755622 (-) True XLOC_028456
TCONS_00055229 mRNA downstream 6481 4712410 ~ 4751983 (-) False XLOC_028455
TCONS_00055228 mRNA downstream 6481 4712410 ~ 4751983 (-) False XLOC_028455
TCONS_00055230 mRNA downstream 6483 4751663 ~ 4751981 (-) True XLOC_028455
TCONS_00055235 mRNA upstream 2211 4782721 ~ 4795205 (-) True XLOC_028458
TCONS_00055236 mRNA upstream 51634 4832144 ~ 4834617 (-) False XLOC_028459
TCONS_00055237 mRNA upstream 51640 4832150 ~ 4834347 (-) True XLOC_028459
TCONS_00055238 mRNA upstream 149896 4930406 ~ 4932619 (-) False XLOC_028460
TCONS_00055241 mRNA upstream 190532 4971042 ~ 5019113 (-) False XLOC_028463
TCONS_00055225 other downstream 187659 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 261673 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2072374 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2595740 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 3809622 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055239 other upstream 149901 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 589546 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1656254 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1785143 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 2404685 7185195 ~ 7185311 (-) True XLOC_028494

Expression Profile

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