RNA id: TCONS_00057318


Basic Information

Item Value
RNA id TCONS_00057318
length 685
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_028461
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4940467 ~ 4962892 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTCATTACTTACAGATTTAATTGATCAACAGAAATATGATCATAAATGCCTTATAAAGATGACTGGCTGCTTTTTAAAAGATCATATATTGTAGTAAGCCATTCATCAAGTTTAGAATTATAAGTATTTCTGTTGCTGTATGAAAACACAACGAGTGGATGAAAAAAATCTTGTGAACTCAGCAAGAGGCATTAAAGCGCAGTTTCCATCCGCTCCACTAGGCGGCATCAGCGAGCTGCTCTTTTAGCCTGAACACCTTTGACAACAGCGCCACAGATCATCACAGGTACACCGTTTTACTGGCGTCAAGTTGAGCTCCAGCAGATGACAGCTCAGTGCCAGACTCAtaatgtcagtcaacagcagatATTACAGCCCGACAGTGAAGAAAAGCGACACAAAGTGCAGTAATGGAGAGTAACGCGACTCACCTtgaagatacacacgtgtgtttgttgtgtttctGCAGCAGATCTTTGACCTGCGCTCAACAGCTGATGCTCCTCCACACACTCCTCCACATCCAGGCGGATTCACAGCTCCAGTAAAGGTATTTATGAGCTCATATTTCCAGTAGAGAGTCCagaaagtgtgtttgttgtgctgCTGCTCTGTCGCGTGTATGTTGGGGGAGGGACTTTCTGTAGAAAGCATGTGATTGGCCAGATTTGGTGTAGAGTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055221 lncRNA downstream 439444 4514438 ~ 4516508 (-) True XLOC_028450
TCONS_00055216 lncRNA downstream 581248 4321168 ~ 4374704 (-) True XLOC_028446
TCONS_00055214 lncRNA downstream 699677 4238000 ~ 4256275 (-) False XLOC_028445
TCONS_00055208 lncRNA downstream 726797 4224273 ~ 4229155 (-) True XLOC_028443
TCONS_00058005 lncRNA downstream 726884 4220148 ~ 4229068 (-) False XLOC_028443
TCONS_00058009 lncRNA upstream 1116 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058011 lncRNA upstream 1116 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058013 lncRNA upstream 1116 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058015 lncRNA upstream 1116 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058014 lncRNA upstream 1116 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055238 mRNA downstream 23333 4930406 ~ 4932619 (-) False XLOC_028460
TCONS_00055236 mRNA downstream 121335 4832144 ~ 4834617 (-) False XLOC_028459
TCONS_00055237 mRNA downstream 121605 4832150 ~ 4834347 (-) True XLOC_028459
TCONS_00055235 mRNA downstream 160747 4782721 ~ 4795205 (-) True XLOC_028458
TCONS_00055234 mRNA downstream 175442 4758464 ~ 4780510 (-) True XLOC_028457
TCONS_00055241 mRNA upstream 9201 4971042 ~ 5019113 (-) False XLOC_028463
TCONS_00055240 mRNA upstream 9201 4971042 ~ 5019113 (-) False XLOC_028463
TCONS_00055242 mRNA upstream 9297 4971138 ~ 5018705 (-) True XLOC_028463
TCONS_00055243 mRNA upstream 63784 5025625 ~ 5092335 (-) False XLOC_028464
TCONS_00055244 mRNA upstream 80726 5042567 ~ 5077158 (-) True XLOC_028464
TCONS_00055239 other downstream 23428 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 385147 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 459161 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2269862 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2793228 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055263 other upstream 408215 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1474923 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1603812 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 2223354 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 2260239 7222080 ~ 7222367 (-) True XLOC_028496

Expression Profile

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