RNA id: TCONS_00055240


Basic Information

Item Value
RNA id TCONS_00055240
length 4805
RNA type mRNA
GC content 0.43
exon number 22
gene id XLOC_028463
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4971042 ~ 5019113 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCACTGTAATACAGTTCCCGATgggttattaaaaatgtaaataataatgttaattagttaattaaaataaacgcATAAGTATCAATGCTTACCTTTTTTGTAATTGCTTATAGATTATGTATACATCGATGAGGTATTCAAACTTTAAGATGAAAGCAAAACTAGTCATAGAAAAGctttcaccatcatcatcatcatcattattatgtgCTCTCCAGATTGCAGTATGGTGGCACCTGCATTCTCGTGGTCAAGCGCGGCGTGGGCGTGGCTAGAAGCTTACGTCACATCAATCCACGCCTATATTGTGTTTCGCAGCCAATTAGATCTGCGGGGCCGGATATTATTCTGAACTTGGGATCCAGCAGCGTCTGTTCCAGGGTGACAAGCGTATTTCCAAAACGGAGAGCAGATTCACAGCCTGACAGATGCAGCAGACCGACGATATGGAGGGGTCCATGGAGTCCCCGAACCTGGAGTTTGAATATGGGGACACAGACAGCTTCACCGCAGAGCTCTCAGAGCTCTACAGCTACACCGAGGAACCGGAGTTCAGCCTAAACCGAGATTACTTTGAGGAAGACTTCAAGAATCAtgTGAAGGGTCGGCGGTGGATGGAGTTGAGTGTGGAGGAGCAGAGGGCGTATGTCATGCGGCTGCTGGATGCACTGGAGGTCACCGATCGAGACAAGAGGCTCAAAGTGGCACGGGCCATCCTCTATTTGGCACAAGGGGTGTTTGACGAATGTGACACAGAGACGGACGTCCTCTACTGGTCTCGACACAATGTCTTTCTGCTGTATGACATGGGCATCTTCACGGCTCTGCTGGAGCTGCTCAGCATGGAGATCGATAATAACCAGGCATGCAGCAGCGCAGTGAGAAAACCAGCCATTTCTCTGGCAGACAGCACTGAACTCAGgGTACTTCTGAGCATCATGTATCTGATGGTTGAGACCATTCGTGTGGAGATGGAGAGTGACAGTCCTGAGAGGAAGGCTGCCAGAGAGGCCTTCAAAATGGAGTTGGGTTCACCTCTTTATAATGGGGAGCCATTTGCCCTGCTCCTCTTCACCATGGTTACCAAGTTCTGCAGCATGAATGCGCCTCATTTCCCCATGAAGAAAGTGCTGCTCCTGCTGTGGAAGACCATACTGTTCACTCTGGGAGGTTTCGAGGAGCTGCAGGAGATGAAGGTGAGAATGAGAGATCATCTGAACCTGCCACCTCTGCCTGAGGACAGCATTAAGGTGGTGCGAAACATGCGGGCCGCTTCTCCACCTGCATCAGCCATGGAGCTCATcgaacaacagcagcagcagaaaaGAGGACGCCGGAGCCGCCGGAGTGCCTTTGTTGATAGCTTGGAAGGAGACAGTCCATATGCCAAGAAACAGCCCCTGGTAAAGCAGGACAGTTTGGACACTTACAACGAACGGGACCCATTCAAGAATGATGACGCCCGGGATGAAGAGGACGACCCAGAGGATGTGGACAGCGGCATTGAAGGAGAAGTGGATCCTCTGGACAGAGACGTCATTATTCAGCCTCCTCCGCCTCCTCCACCACTGCGGCCCCCGACTGAGAGAATGTCCTTCCCCAAGGGCCTGCCATGGGCCCCCAAAGTCAGAGAGAAAGACATCGAGCACTTTCTGGAGACCAGCAGAAACAAATTCATCGGCTTCACCTTGGGAAATGACATCGACACTCTGGTTGGGTTGCCCAGACCTATACACGAGAGTGTCAAGACTCTGAAACTGCACAAGTATGTCTCTATAGCGGAGGTCCAGATCAAGAGAGAGGACGAGCTCCAGCAGTGCCCCATGACTATGGGGGAGGAAGAGGTGGAAGAAACACCCACAGAGATTCTGTATTTGGGGATGTTGCCCAGCCTCTCTCAGTATGTAATTGCACTTTTGAAGCTGCTTCTGGCTGCGGCTCCAACCTCCAAAGCAAAGACAGATTCGATCAACATCCTGGCCGATGTTCTACCAGAGGAGATGCCAATCACCGTCCTCCAGAGCATGAAGCTGGGCATTGATGTCAACAGACACAAGGAGATCATCGTCAAAGCCATTTCAGCTCTCCTGCTACTGCTGCTCAAACACTTCAAACTCAACCACATATACCAGTTTGAATATGTGGCTCAGCATCTGGTGTTTGCCAACTGCATCCCTCTCATCCTCAAATTCTTCAACCAGAACATCATGTCTTACATCAGTGCCAAAAACAGCATTTGTGCACTTGATTTCCCACACTGTGCGGTTCACGAAATGCCTGAGCTCACCGCTGAAAGTCTGgAAGCTGGTGACAGTAATCAGTTTTGCTGGCGTAATCTGTTCTCCTGCATCAACTTGCTGAGAATCCTGAATAAAATCACCAAGTGGAAACACTCAAGAACTATGATGCTTGTGGTGTTCAAGTCTGCTCCTATCCTGAAAAGGGCGCTCAAGGTCAAACAGGCCATGATGCAGCTCTATGTCCTCAAACTACTCAAGATCCAGACCAAGTATTTGGGACGACAGTGGAGAAAGAGTAACATGAAAACCATGTCTGCCATCTACCAGAAAGTCAGACATCGACTCAATGACGACTGGGCATATGGAAACGATATTGACGCTCGACCATGGGACTTCCAGGCGGAGGAGTGTGCGTTACGCGAGAGCATCGAGAAATTCAACACACGGCGCTATGATAAGAATCAGAACAGTGAGTTTGCACCAGTGGACAATTGCCTTCAAAGTGTTTTAGGTCAGCGCGTGGACCTGCCCGAAGACTTCCATTACAGCTACGAGATGTGGCTCGAAAGAGAGGTTTTCTCCCAGCCCATTCAGTGGGAAGGTCTGCTGCAGGCCCAGTGATAGCAGTGATCATTATTATAAGACTTTCTTATTTAACCGACACAATTACTGTGGCTCACGATCGACACACAAACACTCGAAGCAATGAGGATCTGGCATTCCTGTTCTGTTATGAAATCTTGTACATAaagatatatgtgtgtatgtgtgtgaatataagatGGTAATCTTCCTTTGGCAAATCTGAGAAGAGAGCATCTGGTACTTTGGGCAAACacaaatagaatatatatatatatatatatatatatatatgagagagagaTGGAAGGATGATATGGTCTTTTTCAATAACTGAAGCACAATTTAGGTACAATAACTGCACAAATACAGTATtctaatgcatatatatatacttcaGATTTATTTATATGGTCTCTCGCCGTGTCTGACTGTGGAAATGTTGAAACTTTATGTACATATGAAGACTTTATGAGGCAGGGTCTCTTTCAGAAAGCTGTCTTTGACGTGTTGACaggttttttattcatttttttttctgtagcagcaggagtgtgtgtgtgtgtgtgttcttgagaAAGCAGTGAGTCATCTCTTTTTGTCCCCATGAAGCTctgcacatcacacacacacacacacacaccccagagcagcacaatacacacacattcaaagtGTCCTTGGTGACTTTACCGTCACCCACACTAAACATGTCGCTCACTGAATGGTGCTGGTTTTTAACACTCGATTTGATGTTCTTGTTATTGAGACACATTGTGTTCTGAGATTATTAGACAAGGTCTTGTGAAGCTGACGCTGTGAACCAGTGTCTTTTTTATATGCAGCTATGGAAAAACTTGATTTACTGGGTTTATCAGGTGTGGGTTTgagcaaagtgtttatatttgttttattctatcaAGGTCTGATAACTTTTCTTCATAATATATACATCGTCAAAGTGAAGTATTCTTATATGGAGCATTAGTTTATGTTCAGAAAATGTTGGTTGGTCGGAAAAACAATTGTAGCaattgggtgtttcccaatgatgggttgcggctggaagggcatctgttgcgtaaaacatgtgctggataagttggtggttcattccactgtggcgaccccagattaataaagggactaagccgaatgagaaaagaaaatgaagcaacgaatgaataaaaaatcagcgttataaataatgatttttttttgccatcgTTTGACTGTAGTAAAAAACAatgttgtgttgtctaaaaatgagCATAAACACCTGTAAATGgcacagttttattattttatgcaaacaaAATGAATCATTAGTTCACATTTTACTCAAACAGAACCATGTTGTGTTGCTTTTCTGTTGCTTAACTTAACAAAAAAAGTgtgccatgttttcagacatgtttataatcatttaattatattaatatactgAATATAATTATTAGACACATTTGagctttttattttcaaaagaaGTGTTATCACACCTAgagtcaaacaaaaaaaaatccatcttaaacacatacatgtaaatccagagtaattgattatttttaattggtctcttagtttttttttttttccatagcaGTATATATAGACTTTATATACACTTCACTGTTCATCATGTTTGTTTTTACAGGGTTGCTCActgtatcatttattattttttatatattgtcaTTGTTTTGTACTAAATTAAGGTGCTGTGTAAATGAAACTACCTATGATGATCCATGCCAAATGCAGCACCACCACATTTTTATATGCACACTGATTTGTTGTATTTGTACTGCATTGTATGTGAATGTGACAAATTGATGTAAGAgtctttaataaattaataaattatgagGAGAGTTAATAATCAAAACCTTGAGTGACAGATCTGTTCTGTGTGAGATTGTTTTGAGAATctgttaaaagcaaaaaaagttttCGCATTTATTGGATGGAATTTGCAGTG

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0055117 regulation of cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120328-1 Acts upstream of or within regulation of cardiac muscle contraction. Predicted to be active in cytosol. Orthologous to human STRIP2 (striatin interacting protein 2).

Ensembl:

ensembl_id ENSDART00000081990

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058019 lncRNA downstream 3331 4962957 ~ 4967711 (-) True XLOC_028462
TCONS_00058018 lncRNA downstream 4071 4962957 ~ 4966971 (-) False XLOC_028462
TCONS_00058017 lncRNA downstream 4177 4962957 ~ 4966865 (-) False XLOC_028462
TCONS_00058016 lncRNA downstream 4177 4962957 ~ 4966865 (-) False XLOC_028462
TCONS_00058007 lncRNA downstream 4218 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055247 lncRNA upstream 86507 5105620 ~ 5108907 (-) True XLOC_028465
TCONS_00055254 lncRNA upstream 262889 5282002 ~ 5282832 (-) True XLOC_028467
TCONS_00058021 lncRNA upstream 402633 5421746 ~ 5424067 (-) False XLOC_028471
TCONS_00058020 lncRNA upstream 402633 5421746 ~ 5424067 (-) False XLOC_028471
TCONS_00055265 lncRNA upstream 402633 5421746 ~ 5424183 (-) False XLOC_028471
TCONS_00055238 mRNA downstream 38423 4930406 ~ 4932619 (-) False XLOC_028460
TCONS_00055236 mRNA downstream 136425 4832144 ~ 4834617 (-) False XLOC_028459
TCONS_00055237 mRNA downstream 136695 4832150 ~ 4834347 (-) True XLOC_028459
TCONS_00055235 mRNA downstream 175837 4782721 ~ 4795205 (-) True XLOC_028458
TCONS_00055234 mRNA downstream 190532 4758464 ~ 4780510 (-) True XLOC_028457
TCONS_00055243 mRNA upstream 6512 5025625 ~ 5092335 (-) False XLOC_028464
TCONS_00055244 mRNA upstream 23454 5042567 ~ 5077158 (-) True XLOC_028464
TCONS_00055245 mRNA upstream 74894 5094007 ~ 5108941 (-) False XLOC_028465
TCONS_00055246 mRNA upstream 83098 5102211 ~ 5108844 (-) False XLOC_028465
TCONS_00055248 mRNA upstream 206439 5225552 ~ 5240128 (-) False XLOC_028466
TCONS_00055239 other downstream 38518 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 400237 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 474251 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2284952 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2808318 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055263 other upstream 350943 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1417651 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1546540 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 2166082 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 2202967 7222080 ~ 7222367 (-) True XLOC_028496

Expression Profile

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