RNA id: TCONS_00055244


Basic Information

Item Value
RNA id TCONS_00055244
length 662
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_028464
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5025625 ~ 5092335 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGATTTCTGATGCTGTTCGTGTCAGCCTGCTGTGCAAAGGGTTTCGGGTTTTAAACGAGTTAACCCTGAACTGGACTCCACGGCTGAGGAATGCACTCTAGACCCCTGAATCAGCCCCTCACAAAGAACCTTCATTGTGTTCAAAAACTGCTGCATCACAAAAGACTCCCACAAAGGGATTCAGTTTGCAGACCAGAAGCAAGAGTTCAACAAACGTCCCACCAAGATCGGCCGCAGGTCTTTGTCCCGCTCCATCTCACAATCTTCAACGGACAGTTACAGCTCAGCCGCTTCATACACTGACAGCTCCGATGACGAAACTTCTCCTCGCGACAAGCAGCAGAAAAACTCCAAAGGTAGCGGCGATTTCTGCATCAAGAACATCAAACAGGCCGACTTCGGGCGCAGGGAGATCGAGATTGCAGAACAAGAGATGCCTGCGCTCATGGCTTTGAGGAAGAGAGCTCAGGGAGAGAAGCCATTAGCTGGAGCCAAAATTGTTGGTTGCACCCACATCACTGCACAGACTGCTgtgtTAATGGAGACTCTCTCTGCTCTGGGGGCTCAGTGCCGATGGGCCGCCTGTAATATTTACTCCACCCAAAATGAGGTAGCAGCCGCTCTGGCAGAGGGAGGTTTCTCAGTGTTTGCTTGGAAGGG

Function

GO:

id name namespace
GO:0033353 S-adenosylmethionine cycle biological_process
GO:0005829 cytosol cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004013 adenosylhomocysteinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040115-5 Predicted to enable adenosylhomocysteinase activity. Predicted to be involved in S-adenosylmethionine cycle. Predicted to act upstream of or within one-carbon metabolic process. Predicted to be active in cytosol. Is expressed in several structures, including notochord; otic placode; otic vesicle; pronephric duct; and segmental plate. Orthologous to human AHCYL2 (adenosylhomocysteinase like 2).

Ensembl:

ensembl_id ENSDART00000155915

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058019 lncRNA downstream 74856 4962957 ~ 4967711 (-) True XLOC_028462
TCONS_00058018 lncRNA downstream 75596 4962957 ~ 4966971 (-) False XLOC_028462
TCONS_00058017 lncRNA downstream 75702 4962957 ~ 4966865 (-) False XLOC_028462
TCONS_00058016 lncRNA downstream 75702 4962957 ~ 4966865 (-) False XLOC_028462
TCONS_00058007 lncRNA downstream 75743 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055247 lncRNA upstream 28462 5105620 ~ 5108907 (-) True XLOC_028465
TCONS_00055254 lncRNA upstream 204844 5282002 ~ 5282832 (-) True XLOC_028467
TCONS_00058021 lncRNA upstream 344588 5421746 ~ 5424067 (-) False XLOC_028471
TCONS_00058020 lncRNA upstream 344588 5421746 ~ 5424067 (-) False XLOC_028471
TCONS_00055265 lncRNA upstream 344588 5421746 ~ 5424183 (-) False XLOC_028471
TCONS_00055241 mRNA downstream 23454 4971042 ~ 5019113 (-) False XLOC_028463
TCONS_00055240 mRNA downstream 23454 4971042 ~ 5019113 (-) False XLOC_028463
TCONS_00055242 mRNA downstream 23862 4971138 ~ 5018705 (-) True XLOC_028463
TCONS_00055238 mRNA downstream 109948 4930406 ~ 4932619 (-) False XLOC_028460
TCONS_00055236 mRNA downstream 207950 4832144 ~ 4834617 (-) False XLOC_028459
TCONS_00055245 mRNA upstream 16849 5094007 ~ 5108941 (-) False XLOC_028465
TCONS_00055246 mRNA upstream 25053 5102211 ~ 5108844 (-) False XLOC_028465
TCONS_00055248 mRNA upstream 148394 5225552 ~ 5240128 (-) False XLOC_028466
TCONS_00055249 mRNA upstream 152499 5229657 ~ 5239904 (-) False XLOC_028466
TCONS_00055250 mRNA upstream 162968 5240126 ~ 5247335 (-) True XLOC_028466
TCONS_00055239 other downstream 110043 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 471762 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 545776 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2356477 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2879843 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055263 other upstream 292898 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1359606 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1488495 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 2108037 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 2144922 7222080 ~ 7222367 (-) True XLOC_028496

Expression Profile

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