RNA id: TCONS_00055251


Basic Information

Item Value
RNA id TCONS_00055251
length 2850
RNA type mRNA
GC content 0.49
exon number 22
gene id XLOC_028467
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5260941 ~ 5302866 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCAGGTCCACCGACAAGGCAGGACCGTAACCTGCATTACCAGCAAAATAAGCGAATAAACATCCAAGATATACACTATATAGGAGGTTTAAAACGTGAAAATATACTGTCGTGTTATAGTCTCGCCGTTAAAAAAAGGCCTGCAAGAGACGCGTCATCATCCACATCATCATCCGACCGGACGGGAAGGACACACGGGCTGCGACCGAATATTACCGGAATCCCGATCAGGTTTAAATCAACGGATCATTATTTGTTCgtttgattaaattgattaaaacataataacaattaaaataaacgcAAAACATCGCGTCGTTTCGATTAGATGTGTGTTTTGTACATATCATAATCGACGCTGACAGTTTTACGTcttcatttgattatttatttcccacgagagtaaaaaaaaaatagctcggCGTAGGGCGTTACGTAATAGTGGCATTATCCAGGGTGCTGAAACCAACCCATGTACAAAACAAGCCTACACCGAGCGCATTTTACCCTAGTACAAACACTCAACTCGCGCTTTTAAACACGCGTTGGTTGGACGACGAAAGGAGATAGTATTGACATTGTCGGTTTCAAGAGATCCACCTTGGATTCCGTCTGCTTTTCTGTCGGCTAATTTCATATGCATTTGGGCTGTCCTTCCCCCTGAAGTTGAATCTTAAGGTGGTTGTCGACGCTACCGGGAGAAAATGTCGGGACAGACTCTGACGGATCGCATAGCCGCGGCGCAGTACCAGCTCACCGGCTCCGATGTGGCTCGTGCCGTTTGCAAAGCCACCACGCACGAGGTGATGGCGCCCAAGAAGAAGCACCTGGAGTATCTGATCTCGACCACCAACGAGACAAACGTGAACATCCCTCAGATGGCTGACACACTATTTGAGAGATCCACCAATGCCAGCTGGGTGGTGGTGTTTAAAGCTCTAACCACGACCCACCACATCTGCATCTACGGCAATGAGAGATTCATCCAGTATTTGGCATCGAGGACTTCCCTGTTCAATCTCAGCAACTTTATTGATAAAACAGGCACCCATGGTTATGACATGTCTACATTCATCAGACGATATGCACGATATCTGAATGAGAAGGCATATGCTTACCGCGCCATGGCCTTCGACTTTACTCGAGTTAAGAAGGGagctGAAGGTGTGATGAGGACTATGGCTACTGAGAAGCTCTTGAAAGCCATGCCAGCACTGCAGACTCAAGTGGACACACTGCTGGAGTTTGACgTTCATCCTAAAGACTTAAACAACGGCATTATAAACGCAGCGTTCATGCTTCTCTTTAAGGATCTGATCAAGCTCTTCGCCTCCTACAATGACGGCATCATCAATCTATTAGagaaatatttcaaaatgaagaAGTCGGAGTGCAAGGACTCTCTGGAGATTTACAAGAAATTTCTGACCCGAGTGACCAAAATCGCAGAGTTCATGAAAATCGCTGAGCAAGTAGGAGTGGATAAGAACGACATCCCTGACATCTCTTATGCACCCAGCAGTATTCTGGAGTCACTGGAGACACATATGAACAGTCTAGAAGGGAAGAAAGGGGATGGGTCACCCACAAAGGGATCGCCTACCAATAACGTGTCTCCAACCTCCACTCCTGCCAAATCCGGTGCAGCCGTTCCTACTTTGGAGCCTCCGCGTGCTGATGCCGCGCCTGCTGCTGAAACTGCCACCGATTCTCTTCTGGATCTGGACCCGCTGTCTTCCTCTGGACCGTCGGGAGGAGCATCAGCAGCACCCACATCTTGGGGAGATCTGCTGGGGTCAGATATGTTTGCGGCCCCTGAAACAGCTGCTGCTGCAGAGGGCGGGGCCACCGCGTCCACGCCTACTCCTGCTGCCGATGGCACCGCGCCAGCTGAATCTGCGGGTGCCAGTGAGGCCAAACCagctgcagcagcagcagcaggaggaGGAGATCTGATGTCGGCGTTCGATGGATTGGGTGATGTGCTCATGCCAGCTATGGCTCCTCAGGCCGCTGGAGCTTCACCCATGGCCTCTTCACCGGTCAAACCCATGGGAGGAGACCTGGACTCAGCTATGGCTAACATGGCAGGCAATTTGGGAATGGGGAACCAGAAACCGGGTGAAGCAGCAGGAGGGGCGAACTGGCAAGCGCAGCCTGCAGGAGGAGCTGCTCCCATGATGCCTGGCTCTCCGATGATGGCTGCTCAACAACCAGTGAGGCCACAGTTTCCAGCAGGAGCCCCTGGACAACCGATGTCTCCAGGAATGGCCCAGAGTCCCAGGAAGCCCCCGCCTCCTAAAGACCCACTCGCTGACCTCAATATCAAAGACTTCATGTAGATGAGCAGCTGCTATGTCACACTTCTTGTGCAGCCCTGATGGATCAGATGtgcgttctctctctctctctctctctctctctctctctctaaatctTCCATTCATCATATTTAGGGCCACCAGTctgactttctctctctctttcccatctctccctccctccctgtTGTTGTAGCACAAACCGTGACCGTGACTAAGTACGTGTGTACGTGTGTTTGTATTTCAATGTTCTCAGTTACTTCAgatctatatatttaaaaaaaatgataatgacATGAAGAGTAACGGCAGATGCATTATTGATCATGCGTCTGCAGAACTCTTAATTGATAGATGTGCATTCATTTCTCCTCACTCGCTTACCGTGggaaaaatcaaatcaaaaaagtGTGACGTTTTCtgtggaaaatgtttttttttttgctgtggtaAATATCACTGGGCCAGTCTGTGTCATCATCAGTCGAGTATTAACAATCTTTTATCTTCCGTGGGAACAATATCCGCG

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006900 vesicle budding from membrane biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0030136 clathrin-coated vesicle cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0098894 extrinsic component of presynaptic endocytic zone membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0032050 clathrin heavy chain binding molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0005545 1-phosphatidylinositol binding molecular_function
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-81 Predicted to enable SNARE binding activity; clathrin heavy chain binding activity; and phosphatidylinositol binding activity. Predicted to be involved in clathrin-dependent endocytosis and synaptic vesicle budding from presynaptic endocytic zone membrane. Predicted to act upstream of or within clathrin coat assembly. Predicted to be active in clathrin-coated pit; clathrin-coated vesicle; and synaptic vesicle. Predicted to be extrinsic component of presynaptic endocytic zone membrane. Orthologous to human SNAP91 (synaptosome associated protein 91).

Ensembl:

ensembl_id ENSDART00000138590

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055247 lncRNA downstream 152034 5105620 ~ 5108907 (-) True XLOC_028465
TCONS_00058019 lncRNA downstream 293230 4962957 ~ 4967711 (-) True XLOC_028462
TCONS_00058018 lncRNA downstream 293970 4962957 ~ 4966971 (-) False XLOC_028462
TCONS_00058017 lncRNA downstream 294076 4962957 ~ 4966865 (-) False XLOC_028462
TCONS_00058021 lncRNA upstream 118880 5421746 ~ 5424067 (-) False XLOC_028471
TCONS_00058020 lncRNA upstream 118880 5421746 ~ 5424067 (-) False XLOC_028471
TCONS_00055265 lncRNA upstream 118880 5421746 ~ 5424183 (-) False XLOC_028471
TCONS_00055264 lncRNA upstream 118880 5421746 ~ 5424242 (-) False XLOC_028471
TCONS_00058022 lncRNA upstream 118880 5421746 ~ 5453124 (-) False XLOC_028471
TCONS_00055250 mRNA downstream 13606 5240126 ~ 5247335 (-) True XLOC_028466
TCONS_00055248 mRNA downstream 20813 5225552 ~ 5240128 (-) False XLOC_028466
TCONS_00055249 mRNA downstream 21037 5229657 ~ 5239904 (-) False XLOC_028466
TCONS_00055245 mRNA downstream 152000 5094007 ~ 5108941 (-) False XLOC_028465
TCONS_00055246 mRNA downstream 152097 5102211 ~ 5108844 (-) False XLOC_028465
TCONS_00055255 mRNA upstream 1342 5304208 ~ 5317006 (-) True XLOC_028468
TCONS_00055256 mRNA upstream 24766 5327632 ~ 5332814 (-) False XLOC_028469
TCONS_00055257 mRNA upstream 24766 5327632 ~ 5333971 (-) True XLOC_028469
TCONS_00055258 mRNA upstream 60043 5362909 ~ 5371639 (-) False XLOC_028470
TCONS_00055259 mRNA upstream 62888 5365754 ~ 5366566 (-) False XLOC_028470
TCONS_00055239 other downstream 328417 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 690136 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 764150 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2574851 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 3098217 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055263 other upstream 67190 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1133898 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1262787 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 1882329 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 1919214 7222080 ~ 7222367 (-) True XLOC_028496

Expression Profile

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