RNA id: TU2384083


Basic Information

Item Value
RNA id TU2384083
length 2241
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G2084844
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43083018 ~ 43085645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAAACTTTACTTAATAATGTCAGTAACAAAAGCAAAACACAGCATCACAACACCAAGGCAACACGTTGAGTAGGCATCATGGCTGTGGTTTGTTTGTGATCTATTTTCTCCCTCACAGACCAACCGAACAGAACTGAGTAGCATGGTAGGACAAAATATCTGGGGCTCAATTCAATCAAACCCACATTGCAGTATTTACACAGtagcttttttctctctccaaatGGTCAAATAAACTCAGATTGGTCTTGGGGACTGTATAAAAACCTAGCAGGTATGCTAACTACTAGCAGGTATGCTAACTACTAGCAGATATGCTTTCACGTTTCAGAATTAGAAGTGTGTGTACACGAGATTAATATTGTAAATAAAGACATTGCCTAAACATTGCTATGGTGGGTTTGAATGAATCCCAGTATTTTTGTTAAAGCTCAAAAGCAGTTCAAGAAGAACATAAAATAACAGGGTTCACAGAGCAGAACAAATAGAGACCAACCATCTAGACTCCATCTCAACAGCATATTTACAATCATTGGCAGTGGTAGATGCTATTCCTCAGAGAAATCATATACACTTTgtacacaaaaaaacattggttCAGACATtaaaatgctctctctctctctctcacacacacacacacacacacaaacacaacactggaatTCATCAGGCAGTATTGTACAGTAGGTAAGGCATTATGGGATACCGTGATGTTGATAGTTAAAATGAGGGTCTTGACCTTCCAGAATAGGATGTGACATCATAAATAGAACAAATTATAAAAATACTGACTCCTTGCCAGGAACTGCAATACCACGAGCAGTGGTGCAAcgcacttaagtaaaaatacttgaagtactacttaagtagtttttttgggggtatctgtagtttactttagtatttatatttttgacaacttttgacttttactccactacattcctaaagaaaatatactttttactccttacattttcccccgaaacccaaaagtactcgttacatgtttaatgctttagCAAGGACAggaaattgtctaattcacgcacttatcaagaggacatccctggtcatccctacggcctctgatctggcagactcactaaacacaaatgctttgtcagtaaatgatgtctaagtgttggagtctGCCCATAGCTATCCATAAATGtaataaaaagaaaagaaaatggtGTCGTCTAGTTTACTTAATATACgacattttaaatgatttatacttgtgatacttaagtacatttaaaaccaaatacttttagactttttactcaagtagtattttactgggtgactttcacttttacttgagtcattttctattcagGTATCTTTTCTTTTGCTCAAGTATGACAAGCGGgttctttttccaccactgcccatGAGCAACGACCAAACCCACATCCACATCCTGTTCTGTTTTCCACAGAACACATAACGTCACCGTATCTTGAAATAAACCATGCAAGTGTTGTGAGTTTAGGGTCTATGGAACCCAGTGTTGTGAGTTAGGGTCTATGGAACCCAGTATTGTGAGTTAGGGTCTATGGAACCCAGTGATGTGAGTTAGGGTCTATGGAACCCAGTATTGTGAGTTAGGGTCTATGGAACCCAGTATTGTGAGTTAGGGTCTATGGAACCCAGTGTTGTGAGTTAGGGTCTATGGAACCCAGTATTGTGAGTTAGGGTCTATGGAACCCAGTGATGTGAGTTAGGGTCTATGGAACCCAGTGTTGTGAGTTAGGGTCTATGGAACCCAGTATTGTGAGTTAGGGTCTATGGAACCCAGTATTGTGAGTTAGGGTCTATGGAACCCAGTGATGTGAGTTAGGGTCTATGGAACCCAGTATTGTGAGTTAGGGTCTATGGAACCCAGTATTGTGAGTTAGGGTCTATGGAACCCAGTGTTGTGAGTTAGGGTCTATGGAACCCAGTATTGTGAGTTAGGGTCTATGGAACCCAGTGTTGTGAGTTAGGGTCTATGGAACCCAGTGATGTGAGTTAGGGTCTATGGAACTGAGTATTGTGAGTTAGGGTCTATGGAACCCAGTGTTGTGAGTTAGGGTCTATGGAACCCAGTGTTGTGAGTTAGGGTCTATGGAACCCAGTGAGAGGGGCAGAATGTCCAGGTTTACTGACCTCATCATTATCACACGtaatataatatttacatattaCATAATATTAAATATGATTATGTTATAAGATTATATTacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384029 lncRNA downstream 60076 42949733 ~ 43022942 (-) True G2084813
TU2384093 lncRNA downstream 63138 43019435 ~ 43019880 (-) False G2084849
TU2384094 lncRNA downstream 63138 43019571 ~ 43019880 (-) True G2084849
TU2384034 lncRNA downstream 118427 42958980 ~ 42964591 (-) False G2084818
TU2384039 lncRNA downstream 118427 42958980 ~ 42964591 (-) False G2084818
TU2384113 lncRNA upstream 671 43086316 ~ 43086618 (-) True G2084867
TU2384114 lncRNA upstream 1092 43086737 ~ 43086968 (-) True G2084868
TU2384115 lncRNA upstream 1554 43087199 ~ 43087871 (-) True G2084869
TU2384116 lncRNA upstream 6661 43092306 ~ 43092693 (-) True G2084870
TU2384117 lncRNA upstream 7078 43092723 ~ 43094394 (-) True G2084871
XM_036965667.1 mRNA downstream 433117 42647144 ~ 42649901 (-) False LOC118944772
XM_021588507.2 mRNA downstream 518438 42561570 ~ 42564580 (-) True LOC110508058
XM_036965653.1 mRNA downstream 542678 42516527 ~ 42540340 (-) False neu4
XM_036965261.1 mRNA downstream 797473 42262030 ~ 42285545 (-) True aadac
XR_005040014.1 mRNA downstream 975854 41938036 ~ 42107164 (-) False LOC110508063
XM_036965644.1 mRNA upstream 210166 43295811 ~ 43529347 (-) False LOC110519585
XM_036965645.1 mRNA upstream 210166 43295811 ~ 43529347 (-) False LOC110519585
LOC110508094 mRNA upstream 449910 43535555 ~ 43549204 (-) True LOC110508094
XM_036965671.1 mRNA upstream 470931 43556576 ~ 43558533 (-) False tmem97
XM_021588535.2 mRNA upstream 470972 43556617 ~ 43558533 (-) True tmem97
TU2383921 other downstream 297983 42784627 ~ 42785035 (-) True G2084740
TU2382643 other downstream 1402326 41676251 ~ 41680692 (-) True LOC118944786
TU2382642 other downstream 1402378 41676251 ~ 41680640 (-) False LOC118944786
TU2382641 other downstream 1402484 41676251 ~ 41680534 (-) False LOC118944786
TU2382371 other downstream 1658978 41423539 ~ 41424040 (-) True G2083443
TU2385185 other upstream 826515 43912160 ~ 43912680 (-) True G2085726
TU2386614 other upstream 1835264 44920909 ~ 44921312 (-) True G2086783
TU2386975 other upstream 2444711 45530356 ~ 45530780 (-) True G2087090
TU2387219 other upstream 2711425 45797070 ~ 45798330 (-) True G2087288
TU2388664 other upstream 3886936 46972581 ~ 46975108 (-) True ndufc2

Expression Profile