RNA id: TCONS_00005220


Basic Information

Item Value
RNA id TCONS_00005220
length 4086
RNA type mRNA
GC content 0.56
exon number 17
gene id XLOC_002818
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27182704 ~ 27741809 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGGATTGAGCTCTGCTGGAGAAGACCGTCTGCATTCAGATCTCCATCTTCTGGCGTTGTGCACTGACACCGGACCTCTCACCCTGTCTGACCTGTCCTGACCTGTCCCGCTACCCGCAGGCGCACTACACGCTCCGTGCCGATAGACGACACCATGATTAAGTCCAGCTGGTTCTATGTCAAGTTCAAATATAACGAGAAGCTGAAGCCAGGCCAGAACAACTGTAAAGACAGCGATAGCGAGAGTGTCAGCGGCGAATCCAAACCCTCCATCCGGAGCAGCTCCAGAGACAGATTGACGGACTGTGACAGTGAGAGTGACCAAGAAGACAAGgGCTCAGATGCCAGCTCAGAGAAACTCTTCAGCACAGCTGCAGTTAAAGTTCCAGATTTTAGTGTTGACACACTCTCCACCAATGCCAGCCAGGAGCTGCGAGGCCTGGGCATTCCCAAGGTGTCAGGCCTAGAGCGCAGTCAAGAGAAGAGCCAGGAGACTTCCCGGGAAATCTCCTCGGCCACCCCCCCACTGGTGCCCACTTCCCATTCCAAACCTCCCCTCCCCGCCCCTCTTCATCTTCAGCCACCCCCTTCCAGCAGGGGGTTACCTTTGCCCTCGAGGCCAGCTCAAATCCAGAACCCTTGCCCAGAGCGCACACTAAGGCCACTGTCACCCCCTATTGCTCTGCCTCAATCCCAGGGTCAGGAGCTCTCTCAGGCACCCCCGCATCCGTCTCAGCACCCACCTGAATCACCATCTCACCCAAAGCCACCTCGAACCCCAAGTATCTACCACCACCCCCCATCGCCAGCGCTACCAGCCCAGCAGAACCCTACGCAACCCGTGCAGCACAGGCCACCCTCACGCTGTCACCAGCGTCCAATTTCAGCCTACAGTGGCAGCCTTACGCTCAACGGCCTGAGTAGTCGAAGCAGCACTCCGGGGAAGCCTCCGGGCCCATCTCCAGCCCCTCATCTGCACCATCACCAACCTGCCCCCACTGGGGCATCAGCCTCATTCCCCCTGCCCCTGTCAGCGAACCCTACAGCTTCACACACCTTCCCCCCCTCCCTGCCATCCTCCACTCTTCCTCATCACACCAATATGTTTGCGTCGCCTGCTGCTCtgcctccacctcctcctctcACCTCAAACACTCTGCCGGTCCCCGGACATCCAGCTGGGAGTGCCTACTCAGAACAAGACATTCTCCGGCAGGAATTAAACACTCGTTTCCTGGCATCTCAGAGTGCTGATCGTGGGGCATCACTGGGTCCCCCTCCATACTTGCGGACTGAGTTCCACCAGCATCAGCACCAGCATCAGCAtcagcaccagcacacacaccaacacacacaccagcacacCTTCACCCCTTTCCCCCACGCCATCATGCCCACGCCTGCACCGCCCATGGTGCGTACCCCAGCCAGAAATTTCGAAAAATACCCCACTAAAGTCGACCCATTCTACAGGCACAGCCTGTTCCACTCTTACCCCCCAGCGGTGTCTGGCATTCCGCCCGTCATCCCACCAACGGGGCCCTTCGGATCTCTGCAGGGAGCGTTCCAGCCCAAGACCTCAAACCCTCTTGACGTGGCAGCCAGACCTGGAGCCGTCCCACACACACTTCTTCAGAAAGACCCTCGGCTGACAGATCCGTTCCGGCCGGTTCTCAGGAAGCCAGGAAAGTGGTGTGCTATGCATGTTCATATAGCCTGGCAAATTTACCACCACCAACAGAAAGTCAAGCAGATGCAGGTTGACCCACACAAACTGGACTTTGGCCTCAAACCGGAATTCCTAAGTCGACCTCCAGGCCCCACTCTTTTTGGAGCCATACATCACCCTCATGACCTGGCACGACCTGCATCACTTTTCTCAGCAGCAGGGTCCACGCATCCTGCAGCTGCACCTTTCGGACACCCTCCACATCATCCTAGCAACTTTCTTACTCCAGCACCTCATTTAGAGCCCTTCAGCAGACCGCCTTCATTTGGAGGTCTGGCCTCATTAAGCACTGCAGCCTTCGGTGGTCTGGGAAATCCAGCACTCGCATCCAACTCTGTGTTTGGCCACAAAGATTCACCCAGCGCACAACAGCACTTCAGCGGCCCTCACGAGCCATGGAACAGACTCCATCGCACACCGCCATCCTTCCCCACTCCACCGCCCTGGCTCAAACCTGGAGAATCAGAGCGCAGCGCTTCAGTCAGCTCACATGAGAGAGAACGAGAgcgggacagagagagagagcgggacCTGGACAAGAGGGACTCATCAGTCAACAAGGATGATAAAGAACGGGAACCTGTGGAGAAGAGGCACCAAAATCACCAATCCCCACTTCCTGTTAATCCCCTCACTCTATTGGGTCACACCCGTCCATCTGAGCCATCCCGAAACCACATCTCTTCCAGCGAGCCTCGGGACAAAGACAAGGACAAACCCAAAGATCGCGAGAGAGATCGAGAGCACTCAGACTGGAAAGACTCTAACACAGACGAACACAAGCTGAAGGAGAATCATCACAGTGACAAGGACACTCCCGTCATCCATGACGGCCGCGTTTCTGAAGACAAACCAGCCAATCGGATTACAGCATCACCCTACATGCGGCCTGGCGGCATGGATCGGGTGAACGGCGGCCTGACTCGAGACATTCTGGAGAAAAAAGCCGAAATCACTTATGAGAAGAAAAACAGTGAGGTGAAGGTAAAAGAAGAGCGTAAGGAGGAGCAGGACGGTCCCACGGAGAGATCGCCGGAGCAAAGATCTACACCGCAagcgcctcctcctcctcctcctgctgctcTACACCCTCCATCCTCAATGCCAGTGCCCATGGGCATGGCCAGCATGCACCCCATAAACAGCATCAGTAGTTTGGAGAGGACTCGTATGGTGGCGCCCTTCATGGGCATCAGTCCCATCCCAGGGGCAGAGAGGTTTCCCTATCCCGCGTTTCACTGGGATCCCATGAGGGACCCTTACCGAGGACTGGACATCCATCGGAGGGATCCATTAGCTCGGGAACTTCTCCTACGGAATGACCCTCTGCACCGGTTAGCAGCGCCTCGGCTGTACGAAGCAGAGCGCTCATACCGGGACCGCGAGCCTCATGACTTTAACCGAGATCACCCTCACGGACTAACCCTAGAACAGCGGCGGGAACAAGAGCGGGCGCATTTAGAAGAGAGGGAGCGCTTGCACCTGCTCCGAGAGGACTATGAGCAGGGCCGTCTGCACCCCATGCATCACCCTGTTCTAGATGGACATCTCCCGCACCCCGGCCTCATGGCCCCCGGACTTCCCAGCATGCACTACCCTCGTGTTAGTCCTTCCTCTGCTGTGGCCGCCGCTGCCCAGAACGGCATCCTCAACAAAACCCCTCCCACCGCATCACTCAGTGCTCCGCCCCCTCTAATCCCGACCCTAGGCGCACGCTCGTCGTCCCCCAGACGGACTACACCACTCGGGCCTGACATCAGAGACAGAcccccttcacacacacacaaagacatcgAGGCCCGATGAGACCTCAGAAGCGAGCACTTGAGGCTGTATCATATCTGTGTATAGACTGTGCGTTGGTTTCTGTGTTGCGTTTGCTTTTTGTACAAAAGACTGGGATTTTACACGCTCTTTTAGCCCTGTCTGCTCCTCCATTGGTGTGTATTCTTAAACATGTACAGGACACTGAGCAAGTGGACAAGTGTAGATCTCAAACACGGTCAAGGGGTTGTTTTGGAATGTACAGGTACCTCAATACATTGTAGATATGTGCAACGTTGGTGTGTTTCTCTGATTGAGGAAAAAAATGTAAGGTACAAATATGCAAATGGGTGTTATGAAAGCTTTACTTTGAAATGCTGTACATAATGGGCAGTGATCAAGAGGAGCGCGAGTGCACAGGCTCGGGTTTTAGTTTAATGCTGCATATGAATGGTTTTGTCCGAGAGACCACATCCCTTCTTTCAACTATGCAACTCATGCGTGGGCTTTCTCTatcagtttctctctctctctctcctagaGGACTAGCGGTGGCAATTGAACCCTCTCATTCTCCTGTCGCACCAACAC

Function

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0070050 neuron cellular homeostasis biological_process
GO:0021884 forebrain neuron development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-571 Acts upstream of or within embryonic viscerocranium morphogenesis; forebrain neuron development; and neuron cellular homeostasis. Is expressed in several structures, including anterior neural keel; anterior neural rod; brain; hindbrain neural keel; and posterior neural rod. Used to study microcephaly and syndromic intellectual disability. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 26. Orthologous to human AUTS2 (activator of transcription and developmental regulator AUTS2).

Ensembl:

ensembl_id ENSDART00000078920

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006063 lncRNA downstream 21237 27157937 ~ 27162145 (-) False XLOC_002816
TCONS_00006062 lncRNA downstream 21237 27157937 ~ 27162145 (-) True XLOC_002816
TCONS_00006061 lncRNA downstream 180768 27000562 ~ 27002614 (-) False XLOC_002813
TCONS_00006060 lncRNA downstream 180768 27000562 ~ 27002614 (-) True XLOC_002813
TCONS_00005211 lncRNA downstream 180978 27000562 ~ 27002404 (-) False XLOC_002813
TCONS_00006064 lncRNA upstream 631435 28197916 ~ 28202821 (-) False XLOC_002823
TCONS_00006065 lncRNA upstream 631435 28197916 ~ 28267126 (-) False XLOC_002823
TCONS_00006067 lncRNA upstream 631435 28197916 ~ 28291300 (-) False XLOC_002823
TCONS_00006066 lncRNA upstream 631435 28197916 ~ 28291300 (-) False XLOC_002823
TCONS_00006068 lncRNA upstream 631435 28197916 ~ 28291679 (-) False XLOC_002823
TCONS_00005216 mRNA downstream 134212 27028019 ~ 27049170 (-) False XLOC_002815
TCONS_00005217 mRNA downstream 136743 27028043 ~ 27046639 (-) True XLOC_002815
TCONS_00005212 mRNA downstream 173798 27006266 ~ 27009584 (-) False XLOC_002814
TCONS_00005213 mRNA downstream 173912 27006269 ~ 27009470 (-) False XLOC_002814
TCONS_00005215 mRNA downstream 173969 27006571 ~ 27009413 (-) True XLOC_002814
TCONS_00005229 mRNA upstream 171758 27738239 ~ 27741809 (-) True XLOC_002818
TCONS_00005230 mRNA upstream 410892 27977373 ~ 28028999 (-) False XLOC_002820
TCONS_00005231 mRNA upstream 460128 28026609 ~ 28028998 (-) False XLOC_002820
TCONS_00005232 mRNA upstream 460346 28026827 ~ 28027490 (-) True XLOC_002820
TCONS_00005234 mRNA upstream 463097 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005218 other downstream 13310 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005214 other downstream 174258 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005203 other downstream 439251 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005187 other downstream 980859 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005183 other downstream 1042301 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005237 other upstream 632413 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005238 other upstream 726362 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005248 other upstream 804728 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005250 other upstream 876259 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005251 other upstream 881425 28447906 ~ 28448868 (-) True XLOC_002832

Expression Profile

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