RNA id: TCONS_00055269


Basic Information

Item Value
RNA id TCONS_00055269
length 597
RNA type mRNA
GC content 0.37
exon number 32
gene id XLOC_028473
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5498230 ~ 5538752 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atcatggcaaTAATattttttagggcaccaataaataaaaGTGTTTGGTATGCTTCTGAAAGAAtaaccaatatggaccctttaatAAAGGGGAAGTTCGAGCGCCTCTGCAGCGCTTACACAATCCGCCTGACGCGCAAGTCCAAAGTCCAGGATCTTAATACAGAGGTTcagTTTTTGCTCTTTAGTGAACAAACTTACAGAGATGTACATTTGATGAGCTGCATGAAGCACAAAAATGTCCTAAAactttttgatTACATTACCCCCCATTCATCTTCAGATGAGTctcaagaaacatttcttactATTAATGTTGTGGGGTCTGATCgaaataatatgacaaaaTGGCAGCGTtatagtgatGAACATATAACtatattattattccaactactaaaatGTTTGCAGTATCCTCACAGCACGAGcttaaagcataaaagGATGATGCCTGGCAACGTTGTTGTCTCTCACaagtgcactgtaaaaataattacaaTAGGTTTAAAGAGAGATACTGAAGATGAGTGTAATGGTTATGAGGCTTCGCTGATGTACTGCTGGCCAAAAATACTTTTGgaatggcaacattacaat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000180219

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058033 lncRNA downstream 38761 5453571 ~ 5459469 (-) True XLOC_028471
TCONS_00058032 lncRNA downstream 39264 5453571 ~ 5458966 (-) False XLOC_028471
TCONS_00055268 lncRNA downstream 39271 5453571 ~ 5458959 (-) False XLOC_028471
TCONS_00058031 lncRNA downstream 42634 5452472 ~ 5455596 (-) False XLOC_028471
TCONS_00055267 lncRNA downstream 42634 5453571 ~ 5455596 (-) False XLOC_028471
TCONS_00058034 lncRNA upstream 6250 5545002 ~ 5553182 (-) True XLOC_028474
TCONS_00057319 lncRNA upstream 154418 5693170 ~ 5708334 (-) False XLOC_028478
TCONS_00058035 lncRNA upstream 169279 5708031 ~ 5745873 (-) False XLOC_028478
TCONS_00058036 lncRNA upstream 175987 5714739 ~ 5745885 (-) True XLOC_028478
TCONS_00058037 lncRNA upstream 196618 5735370 ~ 5737345 (-) True XLOC_028479
TCONS_00055258 mRNA downstream 126591 5362909 ~ 5371639 (-) False XLOC_028470
TCONS_00055261 mRNA downstream 127371 5366312 ~ 5370859 (-) False XLOC_028470
TCONS_00055260 mRNA downstream 127677 5366312 ~ 5370553 (-) False XLOC_028470
TCONS_00055262 mRNA downstream 127762 5367830 ~ 5370468 (-) False XLOC_028470
TCONS_00055259 mRNA downstream 131664 5365754 ~ 5366566 (-) False XLOC_028470
TCONS_00055270 mRNA upstream 29936 5568688 ~ 5595237 (-) False XLOC_028475
TCONS_00055271 mRNA upstream 48431 5587183 ~ 5597167 (-) False XLOC_028475
TCONS_00055272 mRNA upstream 48863 5587615 ~ 5597802 (-) True XLOC_028475
TCONS_00055273 mRNA upstream 106499 5645251 ~ 5652030 (-) True XLOC_028476
TCONS_00055274 mRNA upstream 126430 5665182 ~ 5691257 (-) True XLOC_028477
TCONS_00055263 other downstream 126608 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 565706 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 927425 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 1001439 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2812140 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055293 other upstream 898012 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1026901 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 1646443 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 1683328 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 2141227 7679979 ~ 7680095 (-) True XLOC_028504