RNA id: TCONS_00055270


Basic Information

Item Value
RNA id TCONS_00055270
length 600
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_028475
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5568688 ~ 5597802 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGTCTCTCTGCCGTCCTCGGGAAATGTTGGTGGAAATTCAGCAGGAGTACCCTGATGACACAGAGCATATCTTCATACCGTCCTGTGTGGTTCTCACCCGCTGTGCTGGGTGCTGCAATGATGAAATGATGGAATGCACCCCCACCGTCACATACAACATTACCTTGGAGATTAAGAGATTGAAACCTCTTCGTCATCAGGGTGACATTTTCATGAGTTTTGCTGAACACAGTGAATGCCAGTGTCGGATGAAAAAAGATCTTCCAAAGGAAATAGAAAATAGTCAGTGTGAGCCTTGCTGTTCTACATGTTCTGAAAGAAGAAGAAGGTTGTTTGTTCAAGACCCAGAGACATGTCAGTGCTCCTGCAAACACTCTGAAGCCGACTGCAGGTCTAGGCAACTAGAACTCAACGAAAGGACCTGCAGGGACCTGTGACCCTATTGTGTGCTGCGCTGGGGGCCGATGTCATCACCGAGGGCCCCAGAGATGGAAAAATGACAGGAGGCCTATGGTTTCTGGCTGTAACGCGACCCTGCAGATGCTCCAGTCATGCCTGCTATGAGAGGCCTCCGCATGGGCCTCAACCCTCTGGACGG

Function

GO:

id name namespace
GO:0045766 positive regulation of angiogenesis biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0050930 induction of positive chemotaxis biological_process
GO:0001525 angiogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0060754 positive regulation of mast cell chemotaxis biological_process
GO:0016310 phosphorylation biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0001666 response to hypoxia biological_process
GO:0001938 positive regulation of endothelial cell proliferation biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0005172 vascular endothelial growth factor receptor binding molecular_function
GO:0043183 vascular endothelial growth factor receptor 1 binding molecular_function
GO:0008083 growth factor activity molecular_function
GO:0042056 chemoattractant activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4605 Predicted to enable chemoattractant activity; growth factor activity; and vascular endothelial growth factor receptor 1 binding activity. Involved in phosphorylation. Acts upstream of or within sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in nervous system; pronephros; and vasculature. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); gastrointestinal system cancer (multiple); hematologic cancer (multiple); hypertension (multiple); and reproductive organ cancer (multiple). Orthologous to human VEGFA (vascular endothelial growth factor A).

Ensembl:

ensembl_id ENSDART00000109854

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058034 lncRNA downstream 15506 5545002 ~ 5553182 (-) True XLOC_028474
TCONS_00058033 lncRNA downstream 109219 5453571 ~ 5459469 (-) True XLOC_028471
TCONS_00058032 lncRNA downstream 109722 5453571 ~ 5458966 (-) False XLOC_028471
TCONS_00055268 lncRNA downstream 109729 5453571 ~ 5458959 (-) False XLOC_028471
TCONS_00055267 lncRNA downstream 113092 5453571 ~ 5455596 (-) False XLOC_028471
TCONS_00057319 lncRNA upstream 97933 5693170 ~ 5708334 (-) False XLOC_028478
TCONS_00058035 lncRNA upstream 112794 5708031 ~ 5745873 (-) False XLOC_028478
TCONS_00058036 lncRNA upstream 119502 5714739 ~ 5745885 (-) True XLOC_028478
TCONS_00058037 lncRNA upstream 140133 5735370 ~ 5737345 (-) True XLOC_028479
TCONS_00058038 lncRNA upstream 143773 5739010 ~ 5739938 (-) True XLOC_028480
TCONS_00055269 mRNA downstream 29936 5498230 ~ 5538752 (-) True XLOC_028473
TCONS_00055258 mRNA downstream 197049 5362909 ~ 5371639 (-) False XLOC_028470
TCONS_00055261 mRNA downstream 197829 5366312 ~ 5370859 (-) False XLOC_028470
TCONS_00055260 mRNA downstream 198135 5366312 ~ 5370553 (-) False XLOC_028470
TCONS_00055262 mRNA downstream 198220 5367830 ~ 5370468 (-) False XLOC_028470
TCONS_00055273 mRNA upstream 50014 5645251 ~ 5652030 (-) True XLOC_028476
TCONS_00055274 mRNA upstream 69945 5665182 ~ 5691257 (-) True XLOC_028477
TCONS_00055275 mRNA upstream 155617 5750854 ~ 5764255 (-) True XLOC_028481
TCONS_00055276 mRNA upstream 169249 5764486 ~ 5775507 (-) True XLOC_028482
TCONS_00055277 mRNA upstream 189733 5784970 ~ 5795309 (-) True XLOC_028483
TCONS_00055263 other downstream 197066 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 636164 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 997883 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 1071897 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2882598 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055293 other upstream 841527 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 970416 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 1589958 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 1626843 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 2084742 7679979 ~ 7680095 (-) True XLOC_028504

Expression Profile

//