RNA id: TU2387183


Basic Information

Item Value
RNA id TU2387183
length 2328
lncRNA type intronic
GC content 0.35
exon number 3
gene id G2087254
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45736656 ~ 45739268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTATACTCTCTTTAAAGAATGTCTTCGGTGGGGTAATTGGTATTACCGAAAATAAATACCAAAACTTCGGCAGCCATGCCCTTGTGAAGAGGTTCATTCTACTTTAATGGGAACATTGTTCCATTTAATCTGCTTTCATATTTTTTGAGTAATGGAATAAAGTTATCTTTATATATTTGTCGTCACCTATTAAGCATCATAAGTATTTAATACTTAAAGGATTGCTGTAGGATCCTTAGTTTttattgctgtaaagaaaccactactaaaggacaccaataataagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaagaagaaaccactactaaaggacaccaataagaataagaagaagaagagaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaataagaagaaaccactactaaaggacaccaataagaagaagaagaagaagaaaccactactaaaggacaccaataataataataagaaaccactactaaaggacaccaataagaataagaagaaaccactactaaaggacaccaataagaagaagaagaagaagagaccactactaaaggacaccaataagaataagaagaaaccactactaaaggacaccaatacgaagaagaaaccactactaaaggacaccaataataagaagaaaccactactaaaggacaccaataataagaagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaagaagaagagaccactactaaaggacaccaataataagaagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaataagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataataagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaagaagaaaccactactaaaggacaccaataagaataagaagaaaccactactaaaggacaccaataagaataagaagaaaccactactaaaggacaccaataagaagaagaagaagaagaaaccactactaaaggacaccaataataataagaagaagaaaccactactaaaggacaccaataagaataagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaagaaaccactactaaaggacaccaataagaagaagaaaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataataataagaagaaaccactactaaaggacaccaataagaagaagaagagaccactactaaaggacaccaataagaagaagaagaaaccactactaaaggacaccaataagaataagaagaaaccactactaaaggacaccaataagaagaagaaaccactactaaaggacaccaataagaagaagaaaccactactaaaggacaccaataataagaagaagaagaaaccactactaaaggacaccaataataagaagaagaaaccactactaaaggacaccaataataataagaagaaaccactactaaaggacaccaataataagaagaagaaaccactactaaaggacaccaataagaagaagaagaagaagaaaccactactaaaggacaccaataagaataagaagaaaccactactaaaggacaccaataagaagaagaagaagaaaccactactaaaggacaccaataagaagaagaagaagaaaccactactaaaggacaccaataagaagaagaaaccactactaaaggacaccaataataataagaagaagaaaccactactaaaggacaccaataagtagaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387182 lncRNA downstream 2261 45733910 ~ 45734395 (-) True G2087253
TU2387163 lncRNA downstream 30212 45704989 ~ 45706444 (-) True G2087234
TU2387162 lncRNA downstream 34183 45702242 ~ 45702473 (-) True G2087233
TU2387042 lncRNA downstream 53669 45682164 ~ 45682987 (-) False G2087140
TU2387041 lncRNA downstream 53669 45682531 ~ 45682987 (-) True G2087140
TU2387250 lncRNA upstream 93593 45832861 ~ 45877757 (-) True G2087309
TU2387274 lncRNA upstream 138704 45877972 ~ 45878517 (-) True G2087328
TU2387278 lncRNA upstream 141580 45880848 ~ 45881060 (-) True G2087332
TU2387292 lncRNA upstream 158832 45898100 ~ 45898408 (-) True G2087345
TU2387298 lncRNA upstream 172331 45911599 ~ 45911862 (-) True G2087351
XM_036965519.1 mRNA downstream 35072 45687954 ~ 45701584 (-) False slc25a15a
XM_036965520.1 mRNA downstream 35072 45687954 ~ 45701584 (-) True slc25a15a
XM_036965517.1 mRNA downstream 35073 45687954 ~ 45701583 (-) False slc25a15a
XM_036965518.1 mRNA downstream 35073 45687954 ~ 45701583 (-) False slc25a15a
XM_036965046.1 mRNA downstream 50543 45673501 ~ 45686113 (-) True stoml3a
XM_036964970.1 mRNA upstream 272925 46012193 ~ 46193881 (-) False cog6
XM_036964969.1 mRNA upstream 272925 46012193 ~ 46197229 (-) False cog6
XM_021594296.2 mRNA upstream 623394 46362662 ~ 46365128 (-) True LOC110515379
XM_021595427.2 mRNA upstream 756284 46495552 ~ 46497886 (-) False lpar6a
XM_036965176.1 mRNA upstream 796933 46536201 ~ 46571285 (-) False rcbtb2
TU2386975 other downstream 205876 45530356 ~ 45530780 (-) True G2087090
TU2386614 other downstream 815344 44920909 ~ 44921312 (-) True G2086783
TU2385185 other downstream 1823976 43912160 ~ 43912680 (-) True G2085726
TU2383921 other downstream 2951621 42784627 ~ 42785035 (-) True G2084740
TU2382643 other downstream 4055964 41676251 ~ 41680692 (-) True LOC118944786
TU2387219 other upstream 57802 45797070 ~ 45798330 (-) True G2087288
TU2388664 other upstream 1233313 46972581 ~ 46975108 (-) True ndufc2
TU2388685 other upstream 1264597 47003865 ~ 47004875 (-) True G2088345
TU2388939 other upstream 1513407 47252675 ~ 47253186 (-) True G2088531
TU2389178 other upstream 1805035 47544303 ~ 47550500 (-) True G2088739

Expression Profile