RNA id: TCONS_00055284


Basic Information

Item Value
RNA id TCONS_00055284
length 4285
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_028486
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5906958 ~ 5913338 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGAGGATTCTTTTCCAGCCTCTTCTCTGGCCTGTTTGGCACCAGAGAGATGAGAATCCTTATTTTAGGTCTGGATGGAGCTGGAAAAACCACAATATTGTACAGACTTCAAGTGGGAGAAGTGGTCACCACAATTCCtaCTATTGGGTTTAATGTGGAGACTGTGACTTATAAGAACCTTAAGTTTCAAGTGTGGGATCTTGGTGGACAGACGAGTATCAGGCCATACTGGCGGTGTTACTACTCCAACACGGATGCAGTGATTTACGTGGTGGACAGCAGTGATCGTGACCGAATGGGCATCTCCAAATCTGAACTGGTGGCTATGTTGGAGgAGGAAGAGCTGAAGAAAGCCATCCTGGTGGTGTTCGCGAACAAGCAGGACATGGAGCAAGCAATGACTCCAACCGAAGTGGCCAACGCTCTCGGTTTACCTGCGCTTAAAGACAGAAAGTGGCAGATCTTCAAGACGTCTGCTACTAAAGGCACTGGCCTGGACGAGGCAATGGAATGGTTAGTGGAGTCACTGAAGAGCCGGCAGTAAATGCACTCAGAAAGAAAAGACCTTGTAAATAGGAACTTCAGAGACTTCTTATCGAGTGTCCTTTGGACCAATGACTGCGTTCTTCCTATTGTGTGAAGATCCTTCCCGTCGAGTGCAGAGACTGATCGACTGGTGTTGAACGGATGAACTCTACAAATGTTTCCCCCTAccctcttctctttttttttttttttttttttgcttttcgtCTGTTTTTGGTAAACCGTATCCACTACATTTGTAACCTCAAAAGGTGTTTGCTTGTTAAATTTGAGATGGGGAATAATCATCGCAGCTGGTAATTGAGTTAAAGTGGGTCGATATTTAAGACTAATCGTCATTTGTATGCTTTGGATTTGTAatggcatatttatatttgcacgtGTACAGGGGAGTGCACTCCTGGCGTTATGGCTGTGAAACAATAAATATGCAGTCTACACATTTTGCGTTGTGATTAGCATCAAACTGGTGCTTTTGCATGATTTTTGGGCgggttttatttaaaaacattgcaCAAGTTGCAGAAAAATCAATATATTGATGCATACTATTGGTCTTTTGACCACAGAGTAGGGTTTAGGTGATGTTTATGTTGTTTCTGGCCAACACACAGAccctatataagctgtgttttaCAAAGAAAACATAGTTCAGCTAATAATTGCTAAGTCTTTCAGTGAGGTGCCTTTATGTTTCTTTGCCTTTAGTCCTGTACGCACAAACTCCATTTTCCTCTTTTTGGCCTCGTTTTTCTTCAGCTGCTTCTTTACCTTCTTTTTGGCAGCAATGTCAGGATTTACGACAGCCTGTCAGGAGGGAAAAGAGAAATTGTGAATTATTTTAGATTAGTAGAAGCTAAAATGTATCATAGAAATGACTCCATGTTCTGAGGGAACTACAAGTAAACGAAGCGTTAAGACACAATAAACATGCTACATGTTTGCTGGTCTGATTCTGAAGTGGATGATACTCAATAAAGGTGTAAAACAAGGTCTAAAAACATTGTTAGCACATTTGGTCGGATTGCTTTCATAGTGTAAACACTCCTGTAGATGAAATATCTCTCTACTACTGACCGAATATGTGAGTGTTATTGTACGTGCTGTGAGAAATCTCACTAAAATGAAGATCATACTCATTAAAAAGGTATTCATACTTCATAGTACTGTATCAAAATACAGATCTAACAGTTCCCATAAAGTTGATGTAGAGTAGGGATGCCCAATACGTCAATTGCGATTTTTTTTCCAGGCGATAACAAAGGTAGCGTGTGTAGATAGcatggcattaaaaaaaatagacaTCAGCCTATCATCCATCCTCACTGAAATGTGTCGCTTGATTGACATACAGAGCAGCCAGTCTGATATCGGGCCATTTCTGATGCATGGGTAACCATGTAAAACTGCACCAACTACGTTAAATGCTGCAAAACTATAGTTTAGCGAAGTCCAAATGTGATTCCAACATGACTGATGATCATTTGGAAGTGTGCTTGAGGCTGGCTATCAGCAGCTACTGTCCGGATAATGCTTGCCTGGCTGATTCCATTCTGTGTAAGTCATCAGAGTAAGGAAATGACAAAAATATGCACACAGTTGAGGGCTATTGCACAATGGGTTCATACACTTATGTAAGGCACATTAATATAAATTGTACAAATACAGAATTCtcaatatgtttataaataaatatatatttagcagttttatatTAGGTAGATCATTTTGACCTGGTCGTTTTATAAGTAGCTCACATGTTGAAAAAGTGTGGGTACTCCTGATGCAGAGTATGACTAAATAAGATTGGTCTTGACAAAATCTGAATGCATGTTAATACAGAGCTTTAGAAGTCTTACCTGCAAGGCCTTGACTTTTTTGCGTGACGCTCGTCTCTGAGTGGCTTCTTTCTGCACTGCAGCGAAAGCCAGAGAGAATTTCTCCAGACCGACCAGCTTCTTCAACAGCTCGATCAGCTCCTGAGCCAAGTTCTTCAGCGTGgggtctgaaaaaaaaatgaccaaagtcATGCAAATGTGTGTTTTTGCCACGTAGTTGGATTGGATGAGGTAGCAGCATTATGCTTAACAGTTCTGTTTGGCATTCAGTAATGATAGATTTTTTGCATGCAGCTTTTAAAAGGTAAATCAATACAGGTTATAAAGATATACTGAGATGCACTGtgcataaaatttatttatttatttatttagtaaataaaggTATACGGAGTTACTTTTAGTTTTTTCCAATTGTAATTTTTTAGGTAATGATGTGATTGTTTATTTACAAGTCTGCTTCCTCTGCAGGGTAAAAATTGCAACTTTTGCTTTGACTCTTCTCAATTTGTTTATCTTTAAATGTTGATTTGTTTTACAGAAATACAACTATGTTTAGGGACTGAGCACCAGTGGTGTGTAGGCCCTAATGAAATTGCtcctattatcattattattattgatttgttCCGGAATGAATCAAAATGTTCTGGGTCTGAACATGCTCAAAACctcacaaaactttgcacacacATCAGAAGTGGTAAACATTTACGTTTGATATAGCTTTCAGAAGTGTGTGTGGTAAAGAGGCTCGACAGTAACGTTCAACGAAGTGCCTCGCAAACTATGTTTCATGCACGCGCACACATCAAACAAGCCAATACCTACAAGAAAGTCTCTTGGAGCTAAATTTAAAACCCAAGAGGAAGTTGGACATTTTTATGAATTATAACtgtatttttttaagattaaaaaaattatttaaaaaaataaataaatatacttttttcacATAACTGGAAGGTTAATTTGCAAATTTTCTGAAAGTCTGAGTTTATGCATCTCACAATTCTGGATTTTATTATACAGAATTGCAACTATTTCtcacaaatgtcactttatttcttttaattctgtttttccttgttcataatTGCAATATATAATTTAAGATATAAAAGTTGCAAGCCAAATTAGATGAAGCCTGACAGTAAATGTCAGAATTTGCGAGATGTTGACCACTCCAAGAAAGTAATAAAAGATAAATGATGCCATGAAAAAACAAAGTTCCACTGTTATGAACAGTTTCCTAAAATAATTGAGTTTTTGTTCGCTTGTTTCTGCTTTATGAACTGACCTTGGTCTGCATATGTGCTGTCCAGTTCTCTATAAAGAGGAGCGATGATTGTGGTGAGATATGGTCCAAGACGATCTTTTCCAAGATCCACCGCTATGGCTCCCAAGAACTTAAAAACACAAGTTCTCTACAAAAACAACAGACAGGTGGGTTTACATCAGCAAAACACAAATACCTTTCAAGATATTTAAGCAGAAAGACAGGCTTAATGTCCACCTTGAGTGGCACTTTGGGTGTGTTCGCCGCTTCTCTTTTGGCCAGTAATGAAAGCTTCTTCATCACCCAGAGGAGAGACGGAGGTTTGTTGTCGTTCTGTTGCTCCTCGAGCTTCTGCTCCTGTTCTCCTCCATTGGTCTCAGTGTTTTCTGCCGTTTCCTCCTCTATATTCTCTTGTTCTTCAGGTGGATTTACGCTATCAGACTCTGGTGAGATCAGGTAGATCACTTTGGCCACATAGAGCAAGTTCTTCACCACCTGATAAAAGATTAAATCACAATTAAAATCATACTGCAagaataatatgaatatttataattatttaaaaaatgttaatatgaaACCAGGGATTAGACATTTTAATCACAGGAGTACAATATTAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0031584 activation of phospholipase D activity biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007030 Golgi organization biological_process
GO:0009404 toxin metabolic process biological_process
GO:0034067 protein localization to Golgi apparatus biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040718-175 Predicted to enable GTP binding activity; GTPase activity; and enzyme activator activity. Predicted to be involved in several processes, including activation of phospholipase D activity; protein localization to Golgi apparatus; and retrograde transport, endosome to Golgi. Predicted to be located in trans-Golgi network. Predicted to be active in Golgi apparatus. Is expressed in anterior axial hypoblast; axial chorda mesoderm; axis; notochord; and polster. Orthologous to human ARL1 (ADP ribosylation factor like GTPase 1).

Ensembl:

ensembl_id ENSDART00000183590

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055280 lncRNA downstream 81034 5809866 ~ 5825924 (-) False XLOC_028484
TCONS_00058036 lncRNA downstream 161073 5714739 ~ 5745885 (-) True XLOC_028478
TCONS_00058035 lncRNA downstream 161085 5708031 ~ 5745873 (-) False XLOC_028478
TCONS_00057320 lncRNA upstream 200103 6113441 ~ 6116670 (-) True XLOC_028487
TCONS_00058039 lncRNA upstream 264248 6177586 ~ 6252475 (-) False XLOC_028488
TCONS_00058042 lncRNA upstream 264248 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00058041 lncRNA upstream 264248 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00058040 lncRNA upstream 264248 6177586 ~ 6252483 (-) True XLOC_028488
TCONS_00055283 mRNA downstream 43052 5850317 ~ 5863906 (-) True XLOC_028485
TCONS_00055282 mRNA downstream 50758 5850225 ~ 5856200 (-) False XLOC_028485
TCONS_00055278 mRNA downstream 75436 5807964 ~ 5831522 (-) False XLOC_028484
TCONS_00055281 mRNA downstream 75922 5827140 ~ 5831036 (-) True XLOC_028484
TCONS_00055279 mRNA downstream 80638 5809831 ~ 5826320 (-) False XLOC_028484
TCONS_00055286 mRNA upstream 426234 6339572 ~ 6373735 (-) False XLOC_028489
TCONS_00055287 mRNA upstream 431085 6344423 ~ 6416155 (-) False XLOC_028489
TCONS_00055288 mRNA upstream 431114 6344452 ~ 6416414 (-) False XLOC_028489
TCONS_00055290 mRNA upstream 509703 6423041 ~ 6567503 (-) False XLOC_028490
TCONS_00055291 mRNA upstream 510014 6423352 ~ 6623645 (-) False XLOC_028490
TCONS_00055263 other downstream 535336 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 974434 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 1336153 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 1410167 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 3220868 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055293 other upstream 523426 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 652315 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 1271857 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 1308742 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 1766641 7679979 ~ 7680095 (-) True XLOC_028504

Expression Profile

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