RNA id: TU2388239


Basic Information

Item Value
RNA id TU2388239
length 914
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G2088031
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46352598 ~ 46354610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATAACAACGAGGATTTACTTGAAATGTGTATACAAAAAACCAATATGCTAATATGATAAAAATGTACATTATCATACAACtcattgtatatactgtatctaaataatatgttaAACCCATAACAATGATTAGGCGTTTTTGGATCTGAGCAGGCTGTATTTAGGAAGAAGTAGCCTAGGTTGGATTGTTTTTTACATCATGGAGATTattgcatttaaaaaataatataaaaatgaAAACAAAATACAGAAACACTCCACAGTACCAATGGAAGAATCACAGGTCTAGACTATTGTACCActaaaccacaacaacaaccaaagagatggagggaaagaaagaaagaacgcaTTCTTTAAAAAGAGATAGTTAGGTACATgacagagaaacaaagagagattGGTCCATACATTGTGCATATAGGAAGAACAGTCAGGAAGGAGGAATAAGGACAGTCAGAGAGGAGGAATAAGGACAGTTAGGGAGGAGGGAATAAGGACAGTCAGAGAGGAGGGAATAAGGACAGTCAGAGAGGAGGGAATAAGGACAGTCAGGGAGGAGGAATAAGGACAGTCAGAGAGGAAGGATAAGGACAGTCAGAGAGGAGGGATAAGGACAGTCAGTGAGGAGGAATAAGGACAGTCAGAGAAGAAAATTAAGAACAGTTTTGTCTGACTGCAGTCATAACAGAACAATAAGATCTGTTTTTTAAGACGGTATTTGTTTCCTGTTGTACATTTTGTCTTGTCCTGTAGTCCTAGCAGTCAGTCTCTGCCTTGGTCTGTCTGATGTCCTGTAGTCCTAGCAGTCAGTCTCTGCCTTGGTCTGTCTGATGTCCTGTAGTCCTAGCAGTCAGTCTCTGCCTTGGTCTGTCTTGTCCTGTAGTCCTAGCAGTCAGTCTCTGCCTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2388271 lncRNA downstream 6072 46346102 ~ 46346992 (-) True G2088052
TU2388273 lncRNA downstream 6729 46344159 ~ 46346335 (-) False G2088052
TU2388269 lncRNA downstream 15241 46337560 ~ 46337823 (-) True G2088050
TU2388258 lncRNA downstream 29224 46323406 ~ 46323840 (-) True G2088043
TU2388260 lncRNA downstream 29413 46323274 ~ 46323651 (-) False G2088043
TU2388279 lncRNA upstream 7155 46361765 ~ 46362556 (-) False G2088057
TU2388280 lncRNA upstream 7155 46361765 ~ 46362556 (-) False G2088057
TU2388281 lncRNA upstream 7155 46361765 ~ 46362556 (-) True G2088057
TU2388301 lncRNA upstream 25276 46379886 ~ 46380744 (-) True G2088067
TU2388304 lncRNA upstream 28760 46383370 ~ 46445526 (-) False G2088069
XM_036964969.1 mRNA downstream 155835 46012193 ~ 46197229 (-) False cog6
XM_036964970.1 mRNA downstream 159183 46012193 ~ 46193881 (-) False cog6
XM_036965519.1 mRNA downstream 651480 45687954 ~ 45701584 (-) False slc25a15a
XM_036965520.1 mRNA downstream 651480 45687954 ~ 45701584 (-) True slc25a15a
XM_036965518.1 mRNA downstream 651481 45687954 ~ 45701583 (-) False slc25a15a
XM_021594296.2 mRNA upstream 8052 46362662 ~ 46365128 (-) True LOC110515379
XM_021595427.2 mRNA upstream 140942 46495552 ~ 46497886 (-) False lpar6a
XM_036965176.1 mRNA upstream 181591 46536201 ~ 46571285 (-) False rcbtb2
XM_036965177.1 mRNA upstream 181591 46536201 ~ 46571673 (-) False rcbtb2
XM_036965178.1 mRNA upstream 181591 46536201 ~ 46571673 (-) False rcbtb2
TU2387219 other downstream 554734 45797070 ~ 45798330 (-) True G2087288
TU2386975 other downstream 822284 45530356 ~ 45530780 (-) True G2087090
TU2386614 other downstream 1431752 44920909 ~ 44921312 (-) True G2086783
TU2385185 other downstream 2440384 43912160 ~ 43912680 (-) True G2085726
TU2383921 other downstream 3568029 42784627 ~ 42785035 (-) True G2084740
TU2388664 other upstream 617971 46972581 ~ 46975108 (-) True ndufc2
TU2388685 other upstream 649255 47003865 ~ 47004875 (-) True G2088345
TU2388939 other upstream 898065 47252675 ~ 47253186 (-) True G2088531
TU2389178 other upstream 1189693 47544303 ~ 47550500 (-) True G2088739
TU2389987 other upstream 1438986 47793596 ~ 47794379 (-) False G2089393

Expression Profile