RNA id: TU2388281


Basic Information

Item Value
RNA id TU2388281
length 675
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G2088057
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46361765 ~ 46362556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATACAGTGGTGGATTAGAACAAACAACCCAACCATCTAGATACAGTGGTGGATTAGAACAAACAACCCAACCATCTAGATACAGTGGTGGATTAGAACAAACAACCCAACCATCTAGATACAGTGGTGGATTAGAACAAACAACCCAACCATCTAGATACAGTGGTGGATTAGAACAAACAACCCAACCGTCTAGATACAGTGGTGGATTAGAACAAACAACCCAACCATCTAGATACAGTGGTGGATTAGAACAAACGACCCAACCATCTAGATACAGTGGTGGATTAGAACAAACAACCCAACCATCTAGATACAGTGTTGGATTAGAACAAACAACCCAACCATCTAGATACAGTGGTGGATTAGAACAAACGACCCAACCATCTAGATACAGTGTTGGATTAGAACAAACAACCCAACCATCTAGATACAGTGTTGGATTAGAACAAACGACCCAACCATCTAGATACAGTGTTGGATTAGAACAAACAACCCAACCATCTAGATACAATGGTGGATTAGAACAAACGACCCAACCATCTAGATACAGTGGTGGATTAGAACAAACAACCCAACCATCTAGATACAATGGTGGATTAGAACAAACAACCCAACCATCTAGATACAGTGGTGGATTAGAACAAACAACCCAACCATCTAGATACAATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2388246 lncRNA downstream 7155 46352598 ~ 46354610 (-) False G2088031
TU2388239 lncRNA downstream 7155 46353064 ~ 46354610 (-) False G2088031
TU2388242 lncRNA downstream 7155 46353064 ~ 46354610 (-) True G2088031
TU2388271 lncRNA downstream 14773 46346102 ~ 46346992 (-) True G2088052
TU2388273 lncRNA downstream 15430 46344159 ~ 46346335 (-) False G2088052
TU2388301 lncRNA upstream 17330 46379886 ~ 46380744 (-) True G2088067
TU2388304 lncRNA upstream 20814 46383370 ~ 46445526 (-) False G2088069
TU2388305 lncRNA upstream 20814 46383370 ~ 46445101 (-) False G2088069
TU2388315 lncRNA upstream 46774 46409330 ~ 46497786 (-) True lpar6a
TU2388329 lncRNA upstream 53459 46416015 ~ 46416970 (-) False G2088085
XM_036964969.1 mRNA downstream 164536 46012193 ~ 46197229 (-) False cog6
XM_036964970.1 mRNA downstream 167884 46012193 ~ 46193881 (-) False cog6
XM_036965519.1 mRNA downstream 660181 45687954 ~ 45701584 (-) False slc25a15a
XM_036965520.1 mRNA downstream 660181 45687954 ~ 45701584 (-) True slc25a15a
XM_036965518.1 mRNA downstream 660182 45687954 ~ 45701583 (-) False slc25a15a
XM_021594296.2 mRNA upstream 106 46362662 ~ 46365128 (-) True LOC110515379
XM_021595427.2 mRNA upstream 132996 46495552 ~ 46497886 (-) False lpar6a
XM_036965176.1 mRNA upstream 173645 46536201 ~ 46571285 (-) False rcbtb2
XM_036965177.1 mRNA upstream 173645 46536201 ~ 46571673 (-) False rcbtb2
XM_036965178.1 mRNA upstream 173645 46536201 ~ 46571673 (-) False rcbtb2
TU2387219 other downstream 563435 45797070 ~ 45798330 (-) True G2087288
TU2386975 other downstream 830985 45530356 ~ 45530780 (-) True G2087090
TU2386614 other downstream 1440453 44920909 ~ 44921312 (-) True G2086783
TU2385185 other downstream 2449085 43912160 ~ 43912680 (-) True G2085726
TU2383921 other downstream 3576730 42784627 ~ 42785035 (-) True G2084740
TU2388664 other upstream 610025 46972581 ~ 46975108 (-) True ndufc2
TU2388685 other upstream 641309 47003865 ~ 47004875 (-) True G2088345
TU2388939 other upstream 890119 47252675 ~ 47253186 (-) True G2088531
TU2389178 other upstream 1181747 47544303 ~ 47550500 (-) True G2088739
TU2389987 other upstream 1431040 47793596 ~ 47794379 (-) False G2089393

Expression Profile