RNA id: TU2388304



Basic Information


Item Value
RNA id TU2388304
length 268
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G2088069
representative False

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46383370 ~ 46445526 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagtagagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtagactagttgagaacacctttatttaaccaggtaggctagttgagaacaagttctcatttacaactgtgacctggccaagataaagcaaagcagttcgacacaaacaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2388301 lncRNA downstream 2626 46379886 ~ 46380744 (-) True G2088067
TU2388279 lncRNA downstream 20814 46361765 ~ 46362556 (-) False G2088057
TU2388280 lncRNA downstream 20814 46361765 ~ 46362556 (-) False G2088057
TU2388281 lncRNA downstream 20814 46361765 ~ 46362556 (-) True G2088057
TU2388239 lncRNA downstream 28760 46353064 ~ 46354610 (-) False G2088031
TU2388361 lncRNA upstream 12171 46457697 ~ 46461384 (-) False G2088105
TU2388360 lncRNA upstream 13045 46458571 ~ 46461384 (-) True G2088105
TU2388363 lncRNA upstream 15922 46461448 ~ 46464042 (-) True G2088106
TU2388387 lncRNA upstream 64585 46510111 ~ 46525606 (-) False G2088121
TU2388388 lncRNA upstream 66013 46511539 ~ 46515054 (-) True G2088122
XM_021594296.2 mRNA downstream 18242 46362662 ~ 46365128 (-) True LOC110515379
XM_036964969.1 mRNA downstream 186141 46012193 ~ 46197229 (-) False cog6
XM_036964970.1 mRNA downstream 189489 46012193 ~ 46193881 (-) False cog6
XM_036965519.1 mRNA downstream 681786 45687954 ~ 45701584 (-) False slc25a15a
XM_021595427.2 mRNA upstream 50026 46495552 ~ 46497886 (-) False lpar6a
XM_036965176.1 mRNA upstream 90675 46536201 ~ 46571285 (-) False rcbtb2
XM_036965177.1 mRNA upstream 90675 46536201 ~ 46571673 (-) False rcbtb2
XM_036965178.1 mRNA upstream 90675 46536201 ~ 46571673 (-) False rcbtb2
XM_036965179.1 mRNA upstream 90806 46536332 ~ 46571289 (-) True rcbtb2
TU2387219 other downstream 585040 45797070 ~ 45798330 (-) True G2087288
TU2386975 other downstream 852590 45530356 ~ 45530780 (-) True G2087090
TU2386614 other downstream 1462058 44920909 ~ 44921312 (-) True G2086783
TU2385185 other downstream 2470690 43912160 ~ 43912680 (-) True G2085726
TU2383921 other downstream 3598335 42784627 ~ 42785035 (-) True G2084740
TU2388664 other upstream 527055 46972581 ~ 46975108 (-) True ndufc2
TU2388685 other upstream 558339 47003865 ~ 47004875 (-) True G2088345
TU2388939 other upstream 807149 47252675 ~ 47253186 (-) True G2088531
TU2389178 other upstream 1098777 47544303 ~ 47550500 (-) True G2088739
TU2389987 other upstream 1348070 47793596 ~ 47794379 (-) False G2089393

Expression Profile