RNA id: TU2388363


Basic Information

Item Value
RNA id TU2388363
length 2398
lncRNA type inter_gene
GC content 0.61
exon number 3
gene id G2088106
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46461448 ~ 46464042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGTTCCTACCCTGGCTCACAGCTCCAGCCCCGGGAAtcagctccagccccaggactcagcTCCAGCGCAGGGACTCAGCTCCAACCCCAAGACtcagctccagccccaggactcagcTCCAGCCAAGGACACAGTTCCAACCCAGGGACTAAACTCCAACAGGTCCAACCCCGGGACTCAGCTCCAACTCCAGGACTCAGCTCCAACAGTTCCAACCCCGGGACTCAGCTCCAACAGGTCCAACCCCGGGACTCAGCTCCAAACCCAGGACTCAGCTCCAACAGTTCCAACCCCGGGACTCAGCTCCAACCCAGGACTCAGCTCCAGCCAAGGACTCAGCTCCAACCGTTACAACCCTGGGACTCAGCTCCAACAGCTCCAACCCCGGGACtcagctccagccccaggactcagcTCCAGCCAAGGACACAGTTCCAACCCAGGGACTAAACTCCAACAGGTCCAACCCCGGGACTCAGCTCCAACAGCTCCAACCCCGGGACTCAGCTCCAAACCCAGGACTCAGCTTCAACAGTTCCAACCCCGGGACACAGCTCCAACCCAGGACTCAGCTCCAGCCAAGGACTCAGCTCCAACCCAGGGACTCAGCACCAACAGTTCCAACCCCGGGACTCAGCTCCAACAGCTCCAACCCCGGGACTCAGCTCCAACCCCGGGACTCCGCTCCAACAGCTCCAACCCCGGGACTCAGCTCCAACCCCGGGACTCAGCTCCAAACCCGGGACTCAGCTACAACCCCGGGACCGAGCTACAACCCCGGGACTCAGCTCCAACAGCTCCAACCCCGGGACTCAGCTCCAACCCCAGGACTCAGCTCCAACCCCAGGACTCAGCTCCAAACCCGGGACTCAGCTCCAACAGCTCCAACCCCGGGACTCAGCTCCAACCCCGGGACTCAGCTCCAAACCCGGGACTCAGCTACAACCCCGGGACTCAGCTACAACCCCGGGACTCAGCTACAACCCCGGGAATCAGCTCCAGCAGTTCCAACCCGGAACTCAGCTCCAACAGTTCCAACCCTGGGACTCAGCTCCAACAGTTCCAACCCTGGGATTCAGCTCCAACAGTTCCAACCCCGGGACtcagctccagccccaggactcagcTCCAACCCAGGGATTAAGCTCCAACAGCTCCAACCCCGGGACTCAGCTCCAAGCCCGGGACTCAGCTCCAACCCCGGGCCTCAGTTCCCACAGTTACAACCCTGGGCCTCAGTTCCAACCCTGGGCCTCAGCTCCAACTCTGGGCCTCAGTTACAACCCTGGGCCTCAGTTATAACCCCGGGACTCAGTCCCAACCCCAGTACTCAGTTCCAACAGTCCCAACACCAGTTCTCAGTTCCAAAAGTCACAAACCCGGGCCTCAGTTCCAACCCTGGGCCTCATTTCCAACCCCGGGACTCAGTTCCAAACCCGAGCCTCAATTCTAACCTTGGGCCTCAGTTCCCACAGTTCCAACCCTGGGCCTCAGTTCCAATCCCGGTCCCAGTTTCAACCCTGGGCCTCAGTCCCAACCCCGGGCCTCAGTTCCAACTCTGGGCTTCAGCTCCAACCCTGGACCTCAGTTCCCACAGTTCCAACCGTGTGCTTCAGTTTCAACCCTGTGCTTCAGTTCCAACACTGTGCCTAAGGTCCAACCCTGGGCCTCAGTTCCAGCCCTGGGCCTCAGTTCCAACCCTGGGCCTCAGTTCCAACCCTGGGCCTCAGTTCCAATCCCGGTCCCAGTTTCAACCCTGGACCTCAGTCCCAACCCCGGGCCTCAGTTCCAACTCTGGGCCTCAGCTCCAACTCTGGGCCTCAGTTGCAACAGTTCCAACCCTGTGCTTCAGTTCCAACCCTGTGCTTCAGTTTCAACCCTGTGCCTCAGTTCCAACCCTGTGCCTCAGATCCAACCCAGGGACTAAGCTCCAACCCCGGGACTCAGCtccagccccaggactcagcTCCAGCCAAGGACACAGTTCCAACCCAGGGACTAAACTCCAACAGGTCCAACCCCGGGACTCAGCTCCAACCCCAGGACTCAGCTCCAACAGCTCCAACCCCGGGACTCAGCTCCAAACCCAGGACTCAGCTCCAACAGTTCCAACCCCGGGACTCAGCTCCAACCCAGGACTCAGCTCCAGCCAAGGACTCAGCTCCAACCCAGGGACTCAGCTCCAACAGTTCCAACCCCGGGACTCAGCTCCAACAGCTACAACCCCGGGACCGAGCTACAACCCCGGGACTCAGCTCCAACAGCTCCAACCCCGGGACTCAGCTCCAACCCCAGGACTCAGCTCCAACCCCAGGACTCAGCTCCAAACCCGGGACTCAGCTCCAACAGCTCCAACCCCGGGACTCAGCTCCAACCCCGGGACTCAGCTCCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2388361 lncRNA downstream 64 46457697 ~ 46461384 (-) False G2088105
TU2388360 lncRNA downstream 64 46458571 ~ 46461384 (-) True G2088105
TU2388304 lncRNA downstream 15922 46383370 ~ 46445526 (-) False G2088069
TU2388303 lncRNA downstream 15922 46445114 ~ 46445526 (-) True G2088069
TU2388305 lncRNA downstream 16347 46383370 ~ 46445101 (-) False G2088069
TU2388387 lncRNA upstream 46069 46510111 ~ 46525606 (-) False G2088121
TU2388388 lncRNA upstream 47497 46511539 ~ 46515054 (-) True G2088122
TU2388386 lncRNA upstream 52134 46516176 ~ 46525606 (-) True G2088121
TU2388399 lncRNA upstream 74790 46538832 ~ 46539374 (-) True G2088129
TU2388401 lncRNA upstream 84235 46548277 ~ 46548505 (-) True G2088131
XM_021594296.2 mRNA downstream 96320 46362662 ~ 46365128 (-) True LOC110515379
XM_036964969.1 mRNA downstream 264219 46012193 ~ 46197229 (-) False cog6
XM_036964970.1 mRNA downstream 267567 46012193 ~ 46193881 (-) False cog6
XM_036965519.1 mRNA downstream 759864 45687954 ~ 45701584 (-) False slc25a15a
XM_021595427.2 mRNA upstream 31510 46495552 ~ 46497886 (-) False lpar6a
XM_036965176.1 mRNA upstream 72159 46536201 ~ 46571285 (-) False rcbtb2
XM_036965177.1 mRNA upstream 72159 46536201 ~ 46571673 (-) False rcbtb2
XM_036965178.1 mRNA upstream 72159 46536201 ~ 46571673 (-) False rcbtb2
XM_036965179.1 mRNA upstream 72290 46536332 ~ 46571289 (-) True rcbtb2
TU2387219 other downstream 663118 45797070 ~ 45798330 (-) True G2087288
TU2386975 other downstream 930668 45530356 ~ 45530780 (-) True G2087090
TU2386614 other downstream 1540136 44920909 ~ 44921312 (-) True G2086783
TU2385185 other downstream 2548768 43912160 ~ 43912680 (-) True G2085726
TU2383921 other downstream 3676413 42784627 ~ 42785035 (-) True G2084740
TU2388664 other upstream 508539 46972581 ~ 46975108 (-) True ndufc2
TU2388685 other upstream 539823 47003865 ~ 47004875 (-) True G2088345
TU2388939 other upstream 788633 47252675 ~ 47253186 (-) True G2088531
TU2389178 other upstream 1080261 47544303 ~ 47550500 (-) True G2088739
TU2389987 other upstream 1329554 47793596 ~ 47794379 (-) False G2089393

Expression Profile